BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0121300 Os01g0121300|AK103404
(540 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0121300 Conserved hypothetical protein 960 0.0
Os02g0799300 Conserved hypothetical protein 315 7e-86
Os04g0644000 Conserved hypothetical protein 308 6e-84
Os06g0645600 Peptidase S1 and S6, chymotrypsin/Hap domain c... 230 2e-60
Os02g0183500 Quinonprotein alcohol dehydrogenase-like domai... 223 3e-58
Os11g0264500 Conserved hypothetical protein 109 5e-24
>Os01g0121300 Conserved hypothetical protein
Length = 540
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/540 (87%), Positives = 471/540 (87%)
Query: 1 MGRRXXXXXXXXXXXXXXXXXXXXSGDTLADLGGAAKGIDSVPEVNNLGPWAKGLLKGMP 60
MGRR SGDTLADLGGAAKGIDSVPEVNNLGPWAKGLLKGMP
Sbjct: 1 MGRRGAGAGAAVVVVAAFVAAAVASGDTLADLGGAAKGIDSVPEVNNLGPWAKGLLKGMP 60
Query: 61 DSAAGPAEGPIAKYPLVLAEERTRRPDVLDHLRMYGGGWNITNKHYWASVSFTGIAGFVL 120
DSAAGPAEGPIAKYPLVLAEERTRRPDVLDHLRMYGGGWNITNKHYWASVSFTGIAGFVL
Sbjct: 61 DSAAGPAEGPIAKYPLVLAEERTRRPDVLDHLRMYGGGWNITNKHYWASVSFTGIAGFVL 120
Query: 121 AAGWFISFGIAVAASCFWKSRIDKENDFHADXXXXXXXXXXXXXXXAGSVILFCGQSKFG 180
AAGWFISFGIAVAASCFWKSRIDKENDFHAD AGSVILFCGQSKFG
Sbjct: 121 AAGWFISFGIAVAASCFWKSRIDKENDFHADILRLVLLVVFIFTLTAGSVILFCGQSKFG 180
Query: 181 QEATSTVDFVVNQSDFTIQTLRNVTDYLSLAKTISVAALYLPSDVQGQIDNLKVDLNKAA 240
QEATSTVDFVVNQSDFTIQTLRNVTDYLSLAKTISVAALYLPSDVQGQIDNLKVDLNKAA
Sbjct: 181 QEATSTVDFVVNQSDFTIQTLRNVTDYLSLAKTISVAALYLPSDVQGQIDNLKVDLNKAA 240
Query: 241 DTISQKTSENYRRIRKVLHNLSVALICIAALMPVLAFLGYVLELYGQRSTVYVFVTLCWT 300
DTISQKTSENYRRIRKVLHNLSVALICIAALMPVLAFLGYVLELYGQRSTVYVFVTLCWT
Sbjct: 241 DTISQKTSENYRRIRKVLHNLSVALICIAALMPVLAFLGYVLELYGQRSTVYVFVTLCWT 300
Query: 301 VVATXXXXXXXXXXXNSAAKDTCEAMDEWAQHPQAETALSNILPCVDESTTNQTLYQSKH 360
VVAT NSAAKDTCEAMDEWAQHPQAETALSNILPCVDESTTNQTLYQSKH
Sbjct: 301 VVATLFILLGIFLILNSAAKDTCEAMDEWAQHPQAETALSNILPCVDESTTNQTLYQSKH 360
Query: 361 VVVILVGIVNRAISALSNRRPHHKHPGQFMPYLCSPYDANLTDRQCKSREVTFDNATTAW 420
VVVILVGIVNRAISALSNRRPHHKHPGQFMPYLCSPYDANLTDRQCKSREVTFDNATTAW
Sbjct: 361 VVVILVGIVNRAISALSNRRPHHKHPGQFMPYLCSPYDANLTDRQCKSREVTFDNATTAW 420
Query: 421 LNYTCTVPDSDLCSGPRTITPEIYSQLVLAANVSYALYHYAPLMLNLQDCKFVRNTFSSI 480
LNYTCTVPDSDLCSGPRTITPEIYSQLVLAANVSYALYHYAPLMLNLQDCKFVRNTFSSI
Sbjct: 421 LNYTCTVPDSDLCSGPRTITPEIYSQLVLAANVSYALYHYAPLMLNLQDCKFVRNTFSSI 480
Query: 481 ASQYCPPIWRDXXXXXXXXXXXXXXXXXXXXXXXFADRPQREEVSELPSGSRITPVDCSP 540
ASQYCPPIWRD FADRPQREEVSELPSGSRITPVDCSP
Sbjct: 481 ASQYCPPIWRDLSLVSAGLALIASGLTLGLLLMLFADRPQREEVSELPSGSRITPVDCSP 540
>Os02g0799300 Conserved hypothetical protein
Length = 546
Score = 315 bits (806), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 259/462 (56%), Gaps = 37/462 (8%)
Query: 59 MPDSAAGPAEGPIAKYPL----------VLAEERTRRPDVLDHLRMYGGGWNITNKHYWA 108
+PD A IA+ P+ VLA+ERT R D L+ R Y GGWNI+ HY A
Sbjct: 40 VPDRYGFVARRSIAEAPVDVNVTTNSSFVLAQERTYRKDPLNGFRKYTGGWNISEVHYMA 99
Query: 109 SVSFTGIAGFVLAAGWFISFGIAVAASC----------FWKSRIDKENDFHADXXXXXXX 158
SV +T F++A WF+ F + + C + SR+ A
Sbjct: 100 SVGYTAFPLFIIALVWFVLFFLVMLGICCKHCCCPHRSYTYSRV-------AYALSLILL 152
Query: 159 XXXXXXXXAGSVILFCGQSKFGQEATSTVDFVVNQSDFTIQTLRNVTDYLSLAKTISVAA 218
G V+L+ GQ KF + T+T++FVV+Q++FT++ L N++D LS AK + +
Sbjct: 153 ILFTCAAIVGCVMLYDGQGKFHKSTTTTLNFVVSQANFTVENLNNLSDSLSAAKKVDIGR 212
Query: 219 LYLPSDVQGQIDNLKVDLNKAADTISQKTSENYRRIRKVLHNLSVALICIAALMPVLAFL 278
+LP+DVQ QI+ ++ LN +A ++ +T++N +I+K+L+ + +ALI IAA+M +LAF+
Sbjct: 213 SFLPNDVQNQINEIQGKLNSSATELATRTTDNSEKIQKLLNQVRIALIIIAAVMLLLAFI 272
Query: 279 GYVLELYGQRSTVYVFVTLCWTVVATXXXXXXXXXXXNSAAKDTCEAMDEWAQHPQAETA 338
G++L ++G V + V + W +V ++ DTC +M+EW HP TA
Sbjct: 273 GFLLSIFGLEFIVSILVIIGWILVTGTFILCGVFLLLHNVVADTCVSMEEWVAHPTEHTA 332
Query: 339 LSNILPCVDESTTNQTLYQSKHVVVILVGIVNRAISALSN-----RRP--HHKHPGQFMP 391
L +I+PCV+ +T N++LY+S+ V LV +VN+ I+ +SN + P + G MP
Sbjct: 333 LDDIIPCVEPATANESLYRSRQVTYQLVNLVNQVITNVSNGNFPPQTPFFYFNQSGPLMP 392
Query: 392 YLCSPYDANLTDRQCKSREVTFDNATTAWLNYTC---TVPDSDLCSGPRTITPEIYSQLV 448
LC+P+ A+L +R C EVT DNAT W N+ C TV +++C+ +TP I Q+
Sbjct: 393 TLCNPFTADLNNRTCTRGEVTLDNATRVWKNFECQTTTVSGTEICTTVGRVTPTILGQMA 452
Query: 449 LAANVSYALYHYAPLMLNLQDCKFVRNTFSSIASQYCPPIWR 490
NVS LY Y P ++ L+DC FVR+TF++I +CP + R
Sbjct: 453 AGVNVSQGLYQYGPFLIQLEDCTFVRDTFTNINQNHCPGLER 494
>Os04g0644000 Conserved hypothetical protein
Length = 546
Score = 308 bits (789), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 164/453 (36%), Positives = 240/453 (52%), Gaps = 16/453 (3%)
Query: 48 LGPWAKGLLKGMPDSAAGPAEGPIAKYPLVLAEERTRRPDVLDHLRMYGGGWNITNKHYW 107
L W + L+ P AG L LA RT R D L +L MY GGWNI+++HYW
Sbjct: 53 LATWRR-LIVETPSPGAGADAAHPGTKSLPLAAARTHRRDPLANLTMYSGGWNISDQHYW 111
Query: 108 ASVSFTGIAGFVLAAGWFISFGIAV----AASCFWKSRIDKENDFHADXXXXXXXXXXXX 163
ASV++T + ++ WFI FGI + CF + + + +
Sbjct: 112 ASVAYTAVPLILVGMLWFIVFGIVLLIISCCCCFCRKKYNTYSP-ATYFISLILLIIFTL 170
Query: 164 XXXAGSVILFCGQSKFGQEATSTVDFVVNQSDFTIQTLRNVTDYLSLAKTISVAALYLPS 223
AG +IL CGQ F TVD++V Q + T+ +LRN + L+ AK I V ++LP
Sbjct: 171 ATIAGCIILHCGQELFHSSTIKTVDYIVGQGNLTVDSLRNFSGSLAAAKNIGVDQVFLPV 230
Query: 224 DVQGQIDNLKVDLNKAADTISQKTSENYRRIRKVLHNLSVALICIAALMPVLAFLGYVLE 283
VQ +ID ++ LN +A+ S + EN ++I+ V+ + L+ IAA+M LA G++
Sbjct: 231 QVQQKIDVIEDKLNSSANEFSTRALENSKKIKHVMDKMQYNLMVIAAVMLGLAIFGFLFS 290
Query: 284 LYGQRSTVYVFVTLCWTVVATXXXXXXXXXXXNSAAKDTCEAMDEWAQHPQAETALSNIL 343
+ G R V + V W V+ ++ DTC AMD+W HPQA TAL +IL
Sbjct: 291 ILGLRFLVSLLVIAGWFVLVITIMMSAAFLLLHNVVADTCVAMDDWVTHPQAHTALDDIL 350
Query: 344 PCVDESTTNQTLYQSKHVVVILVGIVNRAISALSNR------RPHH-KHPGQFMPYLCSP 396
PCVD +T N+++Y+S+ V V LV +VN I +SNR RP + G MP LC P
Sbjct: 351 PCVDVATANESMYRSEEVTVQLVALVNNVIVNISNRDFPPSFRPLYINQSGPLMPKLCDP 410
Query: 397 YDANLTDRQCKSREVTFDNATTAWLNYTCTV---PDSDLCSGPRTITPEIYSQLVLAANV 453
++ +++ R+C EV FD A W + C P S++C+ +TP Y Q+ AA++
Sbjct: 411 FNPDMSPRKCAPGEVNFDTAAAEWKKFECQTTGPPGSEVCATEGRVTPAAYGQMTAAASI 470
Query: 454 SYALYHYAPLMLNLQDCKFVRNTFSSIASQYCP 486
S LY Y P ++ LQDC FVR TF++I+ CP
Sbjct: 471 SQGLYQYGPFLMELQDCSFVRETFTAISDNNCP 503
>Os06g0645600 Peptidase S1 and S6, chymotrypsin/Hap domain containing protein
Length = 583
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 190/337 (56%), Gaps = 14/337 (4%)
Query: 168 GSVILFCGQSKFGQEATSTVDFVVNQSDFTIQTLRNVTDYLSLAKTISVAALYLPSDVQG 227
G ++L+ GQ KF T+T+ FVVNQSD + +LR + ++ AK +V LP+D+QG
Sbjct: 176 GCIVLYDGQGKFHGSTTATLRFVVNQSDGAVASLRGFSGFIEAAKAAAVEKATLPADLQG 235
Query: 228 QIDNLKVDLNKAADTISQKTSENYRRIRKVLHNLSVALICIAALMPVLAFLGYVLELYGQ 287
++D++ ++ +AD ++ +T+ N R+IR L + LI +AA+M LAFLG V L G
Sbjct: 236 KVDDVVRRVDASADDLAARTTTNSRKIRTALETIRTILIVVAAVMLALAFLGLVFSLCGL 295
Query: 288 RSTVYVFVTLCWTVVATXXXXXXXXXXXNSAAKDTCEAMDEWAQHPQAETALSNILPCVD 347
+S VY V W +V ++A DTC AMDEW HPQ TAL +ILPCVD
Sbjct: 296 KSLVYTLVIFGWILVTATFILSGTFLLLHNAVGDTCVAMDEWVLHPQGHTALDDILPCVD 355
Query: 348 ESTTNQTLYQSKHVVVILVGIVNRAISALSN----------RRPHHKHPGQFMPYLCSPY 397
+ T+ L +SK V +V ++N ++ ++N ++ G +P LC+PY
Sbjct: 356 AAATSDALRRSKEVNYQIVSVLNNLLATVANANVPASSPPSPPASYRQSGTPVPLLCNPY 415
Query: 398 DANLTDRQCKSREVTFDNATTAWLNYTC----TVPDSDLCSGPRTITPEIYSQLVLAANV 453
+ +L+DR C + EV +A AW Y C P S++C+ +TP +Y Q+V AAN
Sbjct: 416 NGDLSDRACAAGEVAAADAPRAWRGYVCRATGAAPSSEVCATTGRLTPTMYDQMVAAANA 475
Query: 454 SYALYHYAPLMLNLQDCKFVRNTFSSIASQYCPPIWR 490
S L Y P++ +L DC +VR F ++ + +CP + R
Sbjct: 476 SAGLTQYGPVLADLADCSYVRRAFQAVTAAHCPGLRR 512
>Os02g0183500 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 565
Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 144/458 (31%), Positives = 212/458 (46%), Gaps = 49/458 (10%)
Query: 76 LVLAEERTRRPDVLDHLRMYGGGWNITNKHYWASVSFTGIAGFVLAAGWFISFGIA--VA 133
VLA ERTRR D LD LR+Y GGWNI+++HYWASV FT F AA WF+ FG++ +A
Sbjct: 47 FVLAGERTRRKDPLDGLRLYSGGWNISDEHYWASVGFTVAPVFAAAAIWFVVFGVSLFLA 106
Query: 134 ASCFW-----KSRIDKENDFHADXXXXXXXXXXXXXXXAGSVILFCGQSKFGQEATSTVD 188
CF A G +L+ GQ +F +TV+
Sbjct: 107 GCCFCCCPGSSRGGGGSYSCTALVVSLVLLLAFTAAAAVGCGVLYDGQGRFDGSTAATVE 166
Query: 189 FVVNQSDFTIQTLRNVTDYLSLAKTISVAALYLPSDVQGQIDNLKVDLNKAADTISQKTS 248
+V +S + +LR + AK V + LP+ V+G ID + ++ AAD ++ + +
Sbjct: 167 YVAGKSGDAVASLRGFASSMEAAKAAGVGPVSLPASVKGSIDGVVRKMSSAADELAARMA 226
Query: 249 ENYRRIRKVLHNLSVALICIAALMPVLAFLG----YVLELYGQRSTVYVFVTLCWTVVAT 304
N +IR L + LI +AA M +LA LG ++ + Q+ V + C+T V
Sbjct: 227 SNAAKIRDALETIRKILIVVAATMLILAVLGLGWCFLGGFWLQQRFCSVAPSFCYTSVEV 286
Query: 305 XX--------------------XXXXXXXXXNSAAKDTCEAMDEWAQHPQAETALSNILP 344
+S DTC AM EW Q PQA TAL +ILP
Sbjct: 287 VILWDKFFEGCYKTGSCCNGIDILTILLHEYHSVVGDTCAAMGEWVQRPQARTALDDILP 346
Query: 345 CVDESTTNQTLYQSKHVVVILVGIVNRAISALSNRRP-------HHKHPGQFMPYLCSPY 397
CVD + L +SK V LV ++N I+ +SN ++ G +P LCSP
Sbjct: 347 CVDTAAAADALARSKDVTHHLVTVLNGVIANVSNAAAAGLPPPLYYNQSGPPVPLLCSPG 406
Query: 398 DANLTDRQCKSREVTFDNATTAWLNYTCTVPDS-----DLCSGPRTITPEIYSQLVLAAN 452
+ +C EV A AW C + ++C+ +TP +Y+Q+V AA+
Sbjct: 407 E------RCDPGEVDLAAAPRAWRERVCRTTRAAAAAPEVCATVGRLTPAMYAQMVAAAS 460
Query: 453 VSYALYHYAPLMLNLQDCKFVRNTFSSIASQYCPPIWR 490
AL Y P++ ++ DC FVR F + ++CP + R
Sbjct: 461 ACDALSRYGPVLADMADCAFVRRAFRVVGDEHCPGLGR 498
>Os11g0264500 Conserved hypothetical protein
Length = 545
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 171/431 (39%), Gaps = 35/431 (8%)
Query: 81 ERTRRPDVLDHLRMYGGGWNITNKHYWASVSFTGIAGFVLAAGWFISFGIAVAASCFWKS 140
R RR D LD LR Y GG+NITNKHYW+S FTG G+V+AA W I I V A K
Sbjct: 51 RRIRRVDPLDGLRKYEGGYNITNKHYWSSTIFTGRPGYVIAALWLIGGIIFVGALLISKI 110
Query: 141 RIDKENDFHADXX---------XXXXXXXXXXXXXAGSVILFCGQSKFGQEATSTVDFVV 191
K N + D S I G +F A + + +
Sbjct: 111 FFAKRNTGYGDMNYFLARFHICSMIIFILLAAFVIVASAIAIRGAVRFHSRAEAVKEIIG 170
Query: 192 NQSDFTIQTLRNVTDYLSLAKTISVAALY-LPSDVQGQIDNLKVDLNKAADTISQKTSEN 250
+ T+ N+T+ ++ K + + LY S +++ LN A I K +N
Sbjct: 171 RTALEATATIYNITE--AIEKMQNTSRLYNNNSQAFDHLNSTVKALNSEAVEIQSKAEKN 228
Query: 251 YRRIRKVLHNLSVALICIAA--LMPVLAFLGYVLELYGQRSTVYVFVTLCWTVVATXXXX 308
R + K ++ L I L VLA L V+ + + + +CW + A
Sbjct: 229 MRLVSKGINILEAVTILTVTLNLFAVLALL--VMRPLRLQKLCNLCIAICWILTALIWMY 286
Query: 309 XXXXXXXNSAAKDTCEAMDEWAQHPQAETALSNILPCVDESTTNQTLYQSKHVVVILVGI 368
+ A DTC A++E+ P+ T L I+PC ++ + + L+ + ++
Sbjct: 287 FGLYYFLDEFAGDTCAALEEYQLDPKNST-LGTIIPCSEKFSGSVILHDVGAGIHDIIDQ 345
Query: 369 VNRAISALSNRRPHHKHPGQFMPYLCSPY----DANLTDRQCKSREVTFDNATTAWLNYT 424
VN I + + ++ + + Y+C+P+ + C S T + T
Sbjct: 346 VNSNIYTIKS-----EYGVKQLDYICNPFAGPPEFRYRPENCPSGAATIGDIPQILRRLT 400
Query: 425 CTVPDSDLCSGPRTITPEIYSQLVLAANVSYA-----LYHYAPLMLNLQDCKFVRNTFSS 479
CT DL G E+ S + +Y + P L C+ V + F+
Sbjct: 401 CT----DLGGGAHCAPAELSSAIDYGKVETYTSSIQNMLDIFPGTERLLTCELVESGFAD 456
Query: 480 IASQYCPPIWR 490
I + C P+ R
Sbjct: 457 IVGRQCAPLSR 467
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,387,524
Number of extensions: 555028
Number of successful extensions: 1153
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1140
Number of HSP's successfully gapped: 7
Length of query: 540
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 434
Effective length of database: 11,501,117
Effective search space: 4991484778
Effective search space used: 4991484778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)