BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0616900 Os12g0616900|AK063753
(391 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0616900 Similar to Pyruvate dehydrogenase E1 beta subu... 655 0.0
Os03g0645100 Similar to Pyruvate dehydrogenase E1 beta subu... 599 e-172
Os09g0509200 Similar to Pyruvate dehydrogenase E1 beta subu... 250 2e-66
Os08g0536000 Similar to Pyruvate dehydrogenase E1 beta subu... 247 1e-65
Os07g0170100 Similar to Branched chain alpha-keto acid dehy... 197 8e-51
>Os12g0616900 Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment)
Length = 391
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/329 (96%), Positives = 316/329 (96%)
Query: 63 ESKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLD 122
ESKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLD
Sbjct: 63 ESKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLD 122
Query: 123 TPIAENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXX 182
TPIAENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFK
Sbjct: 123 TPIAENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKIPIVI 182
Query: 183 XXXXXXXXQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVL 242
QLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVL
Sbjct: 183 RGPGGVGRQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVL 242
Query: 243 LYNLKEKIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDI 302
LYNLKEKIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDI
Sbjct: 243 LYNLKEKIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDI 302
Query: 303 RSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQD 362
RSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQD
Sbjct: 303 RSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQD 362
Query: 363 VPTPYAATLEDATVVQPAQIVAAVEQICQ 391
VPTPYAATLEDATVVQPAQIVAAVEQICQ
Sbjct: 363 VPTPYAATLEDATVVQPAQIVAAVEQICQ 391
>Os03g0645100 Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment)
Length = 307
Score = 599 bits (1545), Expect = e-172, Method: Compositional matrix adjust.
Identities = 289/307 (94%), Positives = 291/307 (94%)
Query: 85 MKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFAGMGVGAAMKGLRP 144
MKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSF GMGVGAAMKGLRP
Sbjct: 1 MKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRP 60
Query: 145 IVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXXXXXXXXXXQLGAEHSQRLESYF 204
+VEGMNMGFLLLAYNQISNNCGMLHYTSGGQFK QLGAEHSQRLESYF
Sbjct: 61 VVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYF 120
Query: 205 QSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNLKEKIPDEEYICCLEEAEM 264
QSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNLKEKIPDEEY+ CLEEAEM
Sbjct: 121 QSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNLKEKIPDEEYVLCLEEAEM 180
Query: 265 VRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVL 324
VRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVL
Sbjct: 181 VRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVL 240
Query: 325 IVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPYAATLEDATVVQPAQIVA 384
IVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPYAA LEDATVVQPAQIVA
Sbjct: 241 IVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPYAAPLEDATVVQPAQIVA 300
Query: 385 AVEQICQ 391
AVEQICQ
Sbjct: 301 AVEQICQ 307
>Os09g0509200 Similar to Pyruvate dehydrogenase E1 beta subunit isoform 3 (EC
1.2.4.1)
Length = 376
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 130/326 (39%), Positives = 197/326 (60%), Gaps = 4/326 (1%)
Query: 69 HEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAEN 128
E+ + EAL AL EEM DP+V + GE+VG Y G+YK++KGL + +G RVLDTPI E
Sbjct: 41 KEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEA 100
Query: 129 SFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXXXXXXXX 188
F G+ VGAA +GLRP+VE M F + A + I N+ +Y S GQ
Sbjct: 101 GFTGIAVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGA 160
Query: 189 XXQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYN--- 245
+GA+HSQ +++ +PGL+++ + +A+GL+KAAIR +PVV E+ LLY
Sbjct: 161 AAGVGAQHSQCYAAWYAHVPGLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESF 220
Query: 246 -LKEKIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRS 304
+ ++ D + + +A++ R G+ VTI YS+M + +QAA L +G EVI++RS
Sbjct: 221 PISAEVLDSSFALPIGKAKIEREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRS 280
Query: 305 LKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVP 364
++P D TI S++KT+R++ +EE GIGA + ++++ ++YLDAP+ ++ DVP
Sbjct: 281 IRPLDRATINASVRKTNRLVTIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVP 340
Query: 365 TPYAATLEDATVVQPAQIVAAVEQIC 390
PYAA LE V Q IV A ++ C
Sbjct: 341 MPYAANLERMAVPQVDDIVRAAKRAC 366
>Os08g0536000 Similar to Pyruvate dehydrogenase E1 beta subunit isoform 1 (EC
1.2.4.1)
Length = 374
Score = 247 bits (631), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/326 (39%), Positives = 200/326 (61%), Gaps = 4/326 (1%)
Query: 69 HEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAEN 128
E+ + EAL AL EEM DP+V + GE+VG Y G+YK++KGL + +G RVLDTPI E
Sbjct: 39 KEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEA 98
Query: 129 SFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXXXXXXXX 188
F G+GVGAA +GLRP+VE M F + A + I N+ +Y S GQ
Sbjct: 99 GFTGIGVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGA 158
Query: 189 XXQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYN--- 245
+GA+HSQ +++ +PGL+++ + +A+GL+KAAIR +PVV E+ LLY
Sbjct: 159 AAGVGAQHSQCYAAWYAHVPGLKVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYGESF 218
Query: 246 -LKEKIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRS 304
+ ++ D + + +A++ + G+ VTI +S+M + +QAA+ L +G EVI++RS
Sbjct: 219 PVSAEVLDSSFCLPIGKAKIEQEGKDVTITAFSKMVGYALQAAEILSKEGISAEVINLRS 278
Query: 305 LKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVP 364
++P D TI S++KT+R++ +EE G+GA + +++++ ++YLDAP+ ++ DVP
Sbjct: 279 IRPLDRATINASVRKTNRLVTLEEGFPQHGVGAEICMSVVEDSFEYLDAPVERIAGADVP 338
Query: 365 TPYAATLEDATVVQPAQIVAAVEQIC 390
PYAA LE V Q IV A ++ C
Sbjct: 339 MPYAANLERMAVPQVEDIVRAAKRAC 364
>Os07g0170100 Similar to Branched chain alpha-keto acid dehydrogenase E1 beta
subunit
Length = 370
Score = 197 bits (502), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 165/301 (54%), Gaps = 3/301 (0%)
Query: 68 GHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAE 127
G EV LF A+ +AL + DP VFGEDVG +GG ++ T GLA+ FG RV +TP+ E
Sbjct: 47 GKEVNLFTAINQALHIALDTDPRSYVFGEDVG-FGGVFRCTTGLADRFGRNRVFNTPLCE 105
Query: 128 NSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXXXXXXX 187
AG VG A G R I E ++ A++QI N Y SG +F
Sbjct: 106 QGIAGFAVGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNEFNCGGLTIRSPY 165
Query: 188 XXXQLGAE-HSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNL 246
G HSQ E++F +PGL+++ +P AKGL+ A+IR NPVV FE LY L
Sbjct: 166 GAVGHGGHYHSQSPEAFFCHVPGLKVIIPRSPREAKGLLLASIRDPNPVVFFEPKWLYRL 225
Query: 247 K-EKIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL 305
E++P+E+Y+ L EAE++R G +T++ + + +A + G E+ID+R+L
Sbjct: 226 AVEEVPEEDYMLPLSEAEVIRKGSDITLIGWGAQLAVLEEACEDAAKDGISCELIDLRTL 285
Query: 306 KPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPT 365
P+D T+ S+ KT ++L+ E TGG GA + ++I + + L+AP+ + D P
Sbjct: 286 IPWDKETVEASVSKTGKLLVSHEAPITGGFGAEIAASITERCFQRLEAPVARVCGLDTPF 345
Query: 366 P 366
P
Sbjct: 346 P 346
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,690,559
Number of extensions: 428147
Number of successful extensions: 826
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 821
Number of HSP's successfully gapped: 5
Length of query: 391
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 288
Effective length of database: 11,657,759
Effective search space: 3357434592
Effective search space used: 3357434592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)