Os12g0616900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment).
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Os12g0616900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.99 | 0.361 | 10.6 | -0.211 | 0.689 | 0.529 | -0.776 | 0.117 | -0.258 | 3.2 | 40.69 | 701 | -- | -- |
| 59.01 | 0.358 | 10.6 | -0.211 | 0.688 | 0.528 | -0.779 | -- | -0.256 | 3.17 | 40.69 | 700 | -- | -- |
| 60.71 | 0.363 | 10.6 | -0.165 | 0.68 | 0.51 | -- | 0.515 | -0.242 | 3.12 | 40.7 | 693 | -- | -- |
| 61.09 | 0.364 | 10.6 | -0.203 | 0.69 | 0.555 | -- | -- | -0.262 | 3.2 | 40.74 | 700 | -- | -- |
| 76.34 | 0.407 | 10.6 | -0.122 | -- | 0.463 | -- | 0.617 | -0.198 | -- | 45.99 | 2682 | -- | -- |
| 66.6 | 0.383 | 10.6 | -0.159 | 0.499 | -- | -0.694 | -- | -0.162 | 1.68 | -- | -- | -- | -- |
| 68.39 | 0.387 | 10.6 | -0.136 | 0.497 | -- | -- | -- | -0.157 | 1.31 | -- | -- | -- | -- |
| 75.85 | 0.406 | 10.6 | -0.213 | -- | 0.406 | -- | -- | -0.237 | -- | 40.65 | 2707 | -- | -- |
| 62.19 | 0.367 | 10.6 | -- | 0.677 | 0.523 | -- | -- | -0.232 | 3.12 | 41.19 | 693 | -- | -- |
| 83.65 | 0.427 | 10.6 | -0.117 | -- | -- | -- | -- | -0.147 | -- | -- | -- | -- | -- |
| 68.88 | 0.388 | 10.6 | -- | 0.495 | -- | -- | -- | -0.142 | 1.3 | -- | -- | -- | -- |
| 76.69 | 0.408 | 10.6 | -- | -- | 0.414 | -- | -- | -0.228 | -- | 41.18 | 2706 | -- | -- |
| 84.01 | 0.428 | 10.6 | -- | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.45 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 11 |
| 5 | 56.98 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 11 | 4 |
| 9 | 57.27 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 13 | 10 |
| 10 | 57.28 | temperature | 25.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 40 | 57.78 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 42 | 57.79 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 11 | 3 |
| 55 | 57.92 | humidity | 90.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 57 | 57.95 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 13 | 19 |
| 62 | 57.98 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 74 | 58.09 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 13 | 19 |
| 84 | 58.14 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 87 | 58.15 | humidity | 90.0 | 90 | < th | dose independent | rect. | 13 | 10 |
| 95 | 58.21 | radiation | 40.0 | 720 | < th | dose independent | rect. | 23 | 20 |
| 106 | 58.26 | radiation | 40.0 | 720 | > th | dose independent | rect. | 11 | 3 |
| 108 | 58.27 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 127 | 58.34 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 13 | 1 |
| 155 | 58.37 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 13 | 13 |
| 206 | 58.49 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 14 |
| 220 | 58.51 | radiation | 20.0 | 720 | > th | dose independent | rect. | 11 | 4 |
| 221 | 58.51 | radiation | 40.0 | 720 | < th | dose independent | rect. | 21 | 22 |
| 240 | 58.53 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 265 | 58.60 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 16 | 16 |
| 330 | 58.65 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 339 | 58.71 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 18 | 14 |
| 341 | 58.71 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 348 | 58.72 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 13 | 2 |
| 372 | 58.75 | temperature | 10.0 | 270 | > th | dose dependent | sin | 17 | NA |
| 386 | 58.77 | radiation | 40.0 | 720 | > th | dose independent | sin | 18 | NA |
| 425 | 58.81 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 430 | 58.82 | temperature | 15.0 | 720 | > th | dose dependent | sin | 20 | NA |
| 434 | 58.82 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 13 | 14 |
| 439 | 58.83 | temperature | 10.0 | 90 | > th | dose dependent | sin | 15 | NA |
| 447 | 58.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 10 |
| 460 | 58.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 495 | 58.86 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 609 | 58.95 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 4 |
| 621 | 58.97 | temperature | 30.0 | 270 | < th | dose dependent | sin | 17 | NA |
| 691 | 59.06 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 8 | 18 |
| 695 | 59.07 | radiation | 10.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 729 | 59.09 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 739 | 59.11 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 10 | 16 |
| 744 | 59.12 | temperature | 30.0 | 90 | < th | dose dependent | sin | 15 | NA |
| 753 | 59.14 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 761 | 59.15 | temperature | 30.0 | 720 | > th | dose independent | rect. | 13 | 1 |
| 774 | 59.17 | temperature | 25.0 | 90 | > th | dose independent | rect. | 13 | 18 |
| 777 | 59.17 | temperature | 30.0 | 720 | < th | dose dependent | sin | 21 | NA |
| 787 | 59.17 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 812 | 59.19 | radiation | 40.0 | 720 | > th | dose independent | no | NA | NA |
| 813 | 59.19 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 14 | 8 |