BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0616900 Os12g0616900|AK063753
(391 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G30120.1 | chr1:10584350-10586477 REVERSE LENGTH=407 583 e-167
AT2G34590.1 | chr2:14568956-14570844 REVERSE LENGTH=407 579 e-166
AT5G50850.1 | chr5:20689671-20692976 FORWARD LENGTH=364 249 2e-66
AT1G55510.1 | chr1:20723482-20725505 FORWARD LENGTH=353 191 7e-49
AT3G13450.1 | chr3:4382340-4384295 REVERSE LENGTH=359 190 1e-48
>AT1G30120.1 | chr1:10584350-10586477 REVERSE LENGTH=407
Length = 406
Score = 583 bits (1504), Expect = e-167, Method: Compositional matrix adjust.
Identities = 276/328 (84%), Positives = 295/328 (89%)
Query: 64 SKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDT 123
S S GHE+LLFEAL+E L EEM DP VCV GEDVGHYGGSYKVTKGLA+ FGDLRVLDT
Sbjct: 79 SASTGHELLLFEALQEGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKFGDLRVLDT 138
Query: 124 PIAENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXXX 183
PI EN+F GMG+GAAM GLRP++EGMNMGFLLLA+NQISNNCGMLHYTSGGQF
Sbjct: 139 PICENAFTGMGIGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPVVIR 198
Query: 184 XXXXXXXQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLL 243
QLGAEHSQRLESYFQSIPG+QMVACSTPYNAKGLMKAAIRSENPV+LFEHVLL
Sbjct: 199 GPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLL 258
Query: 244 YNLKEKIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIR 303
YNLKEKIPDE+Y+C LEEAEMVRPGEH+TILTYSRMRYHVMQAAKTLVNKGYDPEVIDIR
Sbjct: 259 YNLKEKIPDEDYVCNLEEAEMVRPGEHITILTYSRMRYHVMQAAKTLVNKGYDPEVIDIR 318
Query: 304 SLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDV 363
SLKPFDLHTIGNS+KKTHRVLIVEECMRTGGIGASL +AI +NF DYLDAP+MCLSSQDV
Sbjct: 319 SLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAINENFHDYLDAPVMCLSSQDV 378
Query: 364 PTPYAATLEDATVVQPAQIVAAVEQICQ 391
PTPYA TLE+ TVVQPAQIV AVEQ+CQ
Sbjct: 379 PTPYAGTLEEWTVVQPAQIVTAVEQLCQ 406
>AT2G34590.1 | chr2:14568956-14570844 REVERSE LENGTH=407
Length = 406
Score = 579 bits (1493), Expect = e-166, Method: Compositional matrix adjust.
Identities = 275/328 (83%), Positives = 293/328 (89%)
Query: 64 SKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDT 123
S GHE+LLFEAL+E L EEM DP VCV GEDVGHYGGSYKVTKGLA+ FGDLRVLDT
Sbjct: 79 SSKPGHELLLFEALQEGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKFGDLRVLDT 138
Query: 124 PIAENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXXX 183
PI EN+F GMG+GAAM GLRP++EGMNMGFLLLA+NQISNNCGMLHYTSGGQF
Sbjct: 139 PICENAFTGMGIGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPVVIR 198
Query: 184 XXXXXXXQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLL 243
QLGAEHSQRLESYFQSIPG+QMVACSTPYNAKGLMKAAIRSENPV+LFEHVLL
Sbjct: 199 GPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLL 258
Query: 244 YNLKEKIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIR 303
YNLKE IPDEEYIC LEEAEMVRPGEH+TILTYSRMRYHVMQAAKTLVNKGYDPEVIDIR
Sbjct: 259 YNLKESIPDEEYICNLEEAEMVRPGEHITILTYSRMRYHVMQAAKTLVNKGYDPEVIDIR 318
Query: 304 SLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDV 363
SLKPFDL+TIGNS+KKTHRVLIVEECMRTGGIGASL +AI +NF DYLDAP+MCLSSQDV
Sbjct: 319 SLKPFDLYTIGNSVKKTHRVLIVEECMRTGGIGASLTAAINENFHDYLDAPVMCLSSQDV 378
Query: 364 PTPYAATLEDATVVQPAQIVAAVEQICQ 391
PTPYA TLE+ TVVQPAQIV AVEQ+CQ
Sbjct: 379 PTPYAGTLEEWTVVQPAQIVTAVEQLCQ 406
>AT5G50850.1 | chr5:20689671-20692976 FORWARD LENGTH=364
Length = 363
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 199/329 (60%), Gaps = 4/329 (1%)
Query: 66 SGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPI 125
+G E+ + +AL A+ EEM DP V V GE+VG Y G+YK+TKGL E +G RV DTPI
Sbjct: 31 AGAKEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPI 90
Query: 126 AENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXXXXX 185
E F G+GVGAA GL+P+VE M F + A + I N+ +Y S GQ
Sbjct: 91 TEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGP 150
Query: 186 XXXXXQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYN 245
+GA+HSQ +++ S+PGL+++A + +A+GL+KAAIR +PVV E+ LLY
Sbjct: 151 NGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYG 210
Query: 246 ----LKEKIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVID 301
+ E+ D + + +A++ R G+ VTI+T+S+M ++AA+ L +G EVI+
Sbjct: 211 ESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEVIN 270
Query: 302 IRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQ 361
+RS++P D TI S++KT R++ VEE G+ A + +++++ + YLDAP+ ++
Sbjct: 271 LRSIRPLDRATINASVRKTSRLVTVEEGFPQHGVCAEICASVVEESFSYLDAPVERIAGA 330
Query: 362 DVPTPYAATLEDATVVQPAQIVAAVEQIC 390
DVP PYAA LE + Q IV A ++ C
Sbjct: 331 DVPMPYAANLERLALPQIEDIVRASKRAC 359
>AT1G55510.1 | chr1:20723482-20725505 FORWARD LENGTH=353
Length = 352
Score = 191 bits (484), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 164/305 (53%), Gaps = 3/305 (0%)
Query: 64 SKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDT 123
S G + L+ A+ +AL + DP VFGEDVG +GG ++ T GLAE FG RV +T
Sbjct: 25 STETGKPLNLYSAINQALHIALDTDPRSYVFGEDVG-FGGVFRCTTGLAERFGKNRVFNT 83
Query: 124 PIAENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXXX 183
P+ E G G+G A G R IVE ++ A++QI N Y SG QF
Sbjct: 84 PLCEQGIVGFGIGLAAMGNRAIVEIQFADYIYPAFDQIVNEAAKFRYRSGNQFNCGGLTI 143
Query: 184 XXXXXXXQLGAE-HSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVL 242
G HSQ E++F +PG+++V +P AKGL+ + IR NPVV FE
Sbjct: 144 RAPYGAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPREAKGLLLSCIRDPNPVVFFEPKW 203
Query: 243 LYNLK-EKIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVID 301
LY E++P+ +Y+ L EAE++R G +T++ + + QA +G E+ID
Sbjct: 204 LYRQAVEEVPEHDYMIPLSEAEVIREGNDITLVGWGAQLTVMEQACLDAEKEGISCELID 263
Query: 302 IRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQ 361
+++L P+D T+ S+KKT R+LI E TGG GA + + I++ + L+AP+ +
Sbjct: 264 LKTLLPWDKETVEASVKKTGRLLISHEAPVTGGFGAEISATILERCFLKLEAPVSRVCGL 323
Query: 362 DVPTP 366
D P P
Sbjct: 324 DTPFP 328
>AT3G13450.1 | chr3:4382340-4384295 REVERSE LENGTH=359
Length = 358
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 164/301 (54%), Gaps = 3/301 (0%)
Query: 68 GHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAE 127
G + L+ A+ +AL ++ DP VFGEDVG +GG ++ T GLAE FG RV +TP+ E
Sbjct: 35 GKSMNLYSAINQALHIALETDPRSYVFGEDVG-FGGVFRCTTGLAERFGKSRVFNTPLCE 93
Query: 128 NSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXXXXXXX 187
G G+G A G R I E ++ A++QI N Y SG QF
Sbjct: 94 QGIVGFGIGLAAMGNRVIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPY 153
Query: 188 XXXQLGAE-HSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNL 246
G HSQ E++F +PG+++V +P AKGL+ ++IR NPVV FE LY
Sbjct: 154 GAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPREAKGLLLSSIRDPNPVVFFEPKWLYRQ 213
Query: 247 K-EKIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL 305
E +P+++Y+ L EAE++R G +T++ + + QA N+G E+ID+++L
Sbjct: 214 AVEDVPEDDYMIPLSEAEVMREGSDITLVGWGAQLTIMEQACLDAENEGISCELIDLKTL 273
Query: 306 KPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPT 365
P+D + S++KT R+LI E TGG GA + + I++ + L+AP+ + D P
Sbjct: 274 IPWDKEIVETSVRKTGRLLISHEAPVTGGFGAEIAATIVERCFLRLEAPVSRVCGLDTPF 333
Query: 366 P 366
P
Sbjct: 334 P 334
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,857,962
Number of extensions: 276661
Number of successful extensions: 574
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 5
Length of query: 391
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 290
Effective length of database: 8,337,553
Effective search space: 2417890370
Effective search space used: 2417890370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)