Os03g0645100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment).
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Os03g0645100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.48 | 0.218 | 13.1 | -0.0647 | 1.35 | 0.373 | 0.0375 | 0.876 | -0.132 | 22.7 | -1.949 | 259 | -- | -- |
| 22.38 | 0.22 | 13.1 | -0.101 | 1.27 | 0.352 | -0.388 | -- | -0.149 | 22.7 | 9.094 | 377 | -- | -- |
| 21.49 | 0.216 | 13.1 | -0.0662 | 1.34 | 0.374 | -- | 0.843 | -0.132 | 22.7 | -1.631 | 260 | -- | -- |
| 22.91 | 0.223 | 13.1 | -0.0757 | 1.26 | 0.324 | -- | -- | -0.142 | 22.6 | 10 | 376 | -- | -- |
| 74.85 | 0.403 | 13.1 | -0.113 | -- | 1.09 | -- | 0.36 | -0.241 | -- | -4.942e-06 | 986 | -- | -- |
| 24.11 | 0.23 | 13.1 | -0.0659 | 1.22 | -- | -0.296 | -- | -0.111 | 22.1 | -- | -- | -- | -- |
| 24.45 | 0.232 | 13.1 | -0.0541 | 1.23 | -- | -- | -- | -0.11 | 22.1 | -- | -- | -- | -- |
| 74.43 | 0.402 | 13.1 | -0.147 | -- | 1.09 | -- | -- | -0.26 | -- | -1.848 | 990 | -- | -- |
| 23.06 | 0.224 | 13.1 | -- | 1.26 | 0.318 | -- | -- | -0.133 | 22.6 | 9.394 | 376 | -- | -- |
| 115.25 | 0.502 | 13.1 | -0.038 | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
| 24.53 | 0.232 | 13.1 | -- | 1.23 | -- | -- | -- | -0.104 | 22.1 | -- | -- | -- | -- |
| 74.98 | 0.403 | 13.1 | -- | -- | 1.08 | -- | -- | -0.241 | -- | -11.18 | 986 | -- | -- |
| 115.29 | 0.501 | 13.1 | -- | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.57 | wind | 5 | 14400 | < th | dose dependent | rect. | 11 | 3 |
| 2 | 20.61 | wind | 3 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 3 | 20.61 | wind | 3 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 7 | 20.67 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 9 | 20.69 | wind | 3 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 23 | 20.82 | wind | 1 | 14400 | > th | dose dependent | rect. | 11 | 4 |
| 25 | 20.82 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 62 | 20.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 99 | 21.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 100 | 21.01 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 12 |
| 232 | 21.18 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 272 | 21.21 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 278 | 21.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 279 | 21.23 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 281 | 21.23 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 294 | 21.24 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 10 | 12 |
| 296 | 21.24 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 304 | 21.24 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 312 | 21.25 | wind | 5 | 14400 | < th | dose dependent | rect. | 9 | 13 |
| 317 | 21.26 | wind | 1 | 14400 | > th | dose dependent | sin | 22 | NA |
| 339 | 21.27 | wind | 9 | 14400 | < th | dose dependent | sin | 22 | NA |
| 379 | 21.29 | wind | 5 | 14400 | < th | dose dependent | sin | 22 | NA |
| 383 | 21.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 397 | 21.30 | wind | 3 | 14400 | < th | dose independent | rect. | 9 | 14 |
| 405 | 21.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 446 | 21.32 | wind | 3 | 14400 | > th | dose independent | rect. | 9 | 14 |
| 450 | 21.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 471 | 21.33 | wind | 3 | 14400 | > th | dose independent | sin | 23 | NA |
| 489 | 21.34 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 12 |
| 512 | 21.35 | wind | 3 | 14400 | > th | dose independent | rect. | 9 | 18 |
| 530 | 21.36 | wind | 3 | 14400 | < th | dose independent | sin | 23 | NA |
| 585 | 21.38 | wind | 3 | 14400 | < th | dose independent | rect. | 9 | 18 |
| 660 | 21.40 | radiation | 40 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 664 | 21.41 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 11 |
| 669 | 21.41 | wind | 3 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 720 | 21.42 | radiation | 40 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 727 | 21.43 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 16 |
| 736 | 21.43 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 737 | 21.43 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 761 | 21.44 | radiation | 1 | 270 | > th | dose dependent | sin | 3 | NA |
| 816 | 21.45 | radiation | 10 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 830 | 21.45 | radiation | 30 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 831 | 21.45 | radiation | 1 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 833 | 21.45 | radiation | 40 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 841 | 21.46 | radiation | 40 | 720 | < th | dose independent | rect. | 17 | 20 |
| 879 | 21.47 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 16 |
| 891 | 21.47 | temperature | 15 | 90 | > th | dose dependent | sin | 1 | NA |
| 918 | 21.47 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 943 | 21.48 | radiation | 40 | 270 | > th | dose independent | rect. | 13 | 22 |
| 955 | 21.48 | radiation | 10 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 972 | 21.49 | radiation | 40 | 270 | > th | dose independent | sin | 12 | NA |