BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0645100 Os03g0645100|AK103256
(307 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0645100 Similar to Pyruvate dehydrogenase E1 beta subu... 606 e-174
Os12g0616900 Similar to Pyruvate dehydrogenase E1 beta subu... 604 e-173
Os09g0509200 Similar to Pyruvate dehydrogenase E1 beta subu... 242 3e-64
Os08g0536000 Similar to Pyruvate dehydrogenase E1 beta subu... 239 2e-63
Os07g0170100 Similar to Branched chain alpha-keto acid dehy... 187 1e-47
>Os03g0645100 Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment)
Length = 307
Score = 606 bits (1562), Expect = e-174, Method: Compositional matrix adjust.
Identities = 294/307 (95%), Positives = 294/307 (95%)
Query: 1 MKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRP 60
MKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRP
Sbjct: 1 MKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRP 60
Query: 61 VVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXXXXXXXXXXQLGAEHSQRLESYF 120
VVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFK QLGAEHSQRLESYF
Sbjct: 61 VVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYF 120
Query: 121 QSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNLKEKIPDEEYVLCLEEAEM 180
QSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNLKEKIPDEEYVLCLEEAEM
Sbjct: 121 QSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNLKEKIPDEEYVLCLEEAEM 180
Query: 181 VRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVL 240
VRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVL
Sbjct: 181 VRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVL 240
Query: 241 IVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPYAAPLEDATVVQPAQIVA 300
IVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPYAAPLEDATVVQPAQIVA
Sbjct: 241 IVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPYAAPLEDATVVQPAQIVA 300
Query: 301 AVEQICQ 307
AVEQICQ
Sbjct: 301 AVEQICQ 307
>Os12g0616900 Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment)
Length = 391
Score = 604 bits (1558), Expect = e-173, Method: Compositional matrix adjust.
Identities = 289/307 (94%), Positives = 291/307 (94%)
Query: 1 MKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRP 60
MKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSF GMGVGAAMKGLRP
Sbjct: 85 MKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFAGMGVGAAMKGLRP 144
Query: 61 VVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXXXXXXXXXXQLGAEHSQRLESYF 120
+VEGMNMGFLLLAYNQISNNCGMLHYTSGGQFK QLGAEHSQRLESYF
Sbjct: 145 IVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYF 204
Query: 121 QSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNLKEKIPDEEYVLCLEEAEM 180
QSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNLKEKIPDEEY+ CLEEAEM
Sbjct: 205 QSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNLKEKIPDEEYICCLEEAEM 264
Query: 181 VRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVL 240
VRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVL
Sbjct: 265 VRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVL 324
Query: 241 IVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPYAAPLEDATVVQPAQIVA 300
IVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPYAA LEDATVVQPAQIVA
Sbjct: 325 IVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPYAATLEDATVVQPAQIVA 384
Query: 301 AVEQICQ 307
AVEQICQ
Sbjct: 385 AVEQICQ 391
>Os09g0509200 Similar to Pyruvate dehydrogenase E1 beta subunit isoform 3 (EC
1.2.4.1)
Length = 376
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 189/310 (60%), Gaps = 4/310 (1%)
Query: 1 MKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRP 60
M DP+V + GE+VG Y G+YK++KGL + +G RVLDTPI E FTG+ VGAA +GLRP
Sbjct: 57 MSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRP 116
Query: 61 VVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXXXXXXXXXXQLGAEHSQRLESYF 120
VVE M F + A + I N+ +Y S GQ +GA+HSQ +++
Sbjct: 117 VVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWY 176
Query: 121 QSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYN----LKEKIPDEEYVLCLE 176
+PGL+++ + +A+GL+KAAIR +PVV E+ LLY + ++ D + L +
Sbjct: 177 AHVPGLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIG 236
Query: 177 EAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKT 236
+A++ R G+ VTI YS+M + +QAA L +G EVI++RS++P D TI S++KT
Sbjct: 237 KAKIEREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKT 296
Query: 237 HRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPYAAPLEDATVVQPA 296
+R++ +EE GIGA + ++++ ++YLDAP+ ++ DVP PYAA LE V Q
Sbjct: 297 NRLVTIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQVD 356
Query: 297 QIVAAVEQIC 306
IV A ++ C
Sbjct: 357 DIVRAAKRAC 366
>Os08g0536000 Similar to Pyruvate dehydrogenase E1 beta subunit isoform 1 (EC
1.2.4.1)
Length = 374
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 192/310 (61%), Gaps = 4/310 (1%)
Query: 1 MKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRP 60
M DP+V + GE+VG Y G+YK++KGL + +G RVLDTPI E FTG+GVGAA +GLRP
Sbjct: 55 MSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIGVGAAYQGLRP 114
Query: 61 VVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXXXXXXXXXXQLGAEHSQRLESYF 120
VVE M F + A + I N+ +Y S GQ +GA+HSQ +++
Sbjct: 115 VVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWY 174
Query: 121 QSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYN----LKEKIPDEEYVLCLE 176
+PGL+++ + +A+GL+KAAIR +PVV E+ LLY + ++ D + L +
Sbjct: 175 AHVPGLKVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIG 234
Query: 177 EAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKT 236
+A++ + G+ VTI +S+M + +QAA+ L +G EVI++RS++P D TI S++KT
Sbjct: 235 KAKIEQEGKDVTITAFSKMVGYALQAAEILSKEGISAEVINLRSIRPLDRATINASVRKT 294
Query: 237 HRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPYAAPLEDATVVQPA 296
+R++ +EE G+GA + +++++ ++YLDAP+ ++ DVP PYAA LE V Q
Sbjct: 295 NRLVTLEEGFPQHGVGAEICMSVVEDSFEYLDAPVERIAGADVPMPYAANLERMAVPQVE 354
Query: 297 QIVAAVEQIC 306
IV A ++ C
Sbjct: 355 DIVRAAKRAC 364
>Os07g0170100 Similar to Branched chain alpha-keto acid dehydrogenase E1 beta
subunit
Length = 370
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 155/284 (54%), Gaps = 3/284 (1%)
Query: 1 MKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRP 60
+ DP VFGEDVG +GG ++ T GLA+ FG RV +TP+ E G VG A G R
Sbjct: 64 LDTDPRSYVFGEDVG-FGGVFRCTTGLADRFGRNRVFNTPLCEQGIAGFAVGLAAMGNRA 122
Query: 61 VVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKXXXXXXXXXXXXXQLGAE-HSQRLESY 119
+ E ++ A++QI N Y SG +F G HSQ E++
Sbjct: 123 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNEFNCGGLTIRSPYGAVGHGGHYHSQSPEAF 182
Query: 120 FQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNLK-EKIPDEEYVLCLEEA 178
F +PGL+++ +P AKGL+ A+IR NPVV FE LY L E++P+E+Y+L L EA
Sbjct: 183 FCHVPGLKVIIPRSPREAKGLLLASIRDPNPVVFFEPKWLYRLAVEEVPEEDYMLPLSEA 242
Query: 179 EMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKTHR 238
E++R G +T++ + + +A + G E+ID+R+L P+D T+ S+ KT +
Sbjct: 243 EVIRKGSDITLIGWGAQLAVLEEACEDAAKDGISCELIDLRTLIPWDKETVEASVSKTGK 302
Query: 239 VLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTP 282
+L+ E TGG GA + ++I + + L+AP+ + D P P
Sbjct: 303 LLVSHEAPITGGFGAEIAASITERCFQRLEAPVARVCGLDTPFP 346
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,063,110
Number of extensions: 397950
Number of successful extensions: 774
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 769
Number of HSP's successfully gapped: 5
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)