Os08g0536000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyruvate dehydrogenase E1 beta subunit isoform 1 (EC 1.2.4.1).
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Os08g0536000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyruvate dehydrogenase E1 beta subunit isoform 1 (EC 1.2.4.1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.03 | 0.262 | 10.6 | 0.136 | 0.719 | 1.58 | 0.355 | 2.84 | 0.00846 | 16.9 | 0.1871 | 1430 | -- | -- |
| 34.39 | 0.273 | 10.6 | 0.365 | 0.754 | 0.851 | 0.373 | -- | 0.0111 | 16.5 | 0.17 | 1455 | -- | -- |
| 31.29 | 0.261 | 10.6 | 0.128 | 0.719 | 1.61 | -- | 2.95 | 0.0086 | 17.1 | 0.1921 | 1422 | -- | -- |
| 34.33 | 0.273 | 10.5 | 0.391 | 0.81 | 0.891 | -- | -- | 0.0513 | 16.5 | 0.17 | 1457 | -- | -- |
| 58.25 | 0.355 | 10.6 | 0.0924 | -- | 1.66 | -- | 3.08 | -0.0088 | -- | 0.2023 | 1416 | -- | -- |
| 41.81 | 0.303 | 10.6 | 0.139 | 0.737 | -- | 0.516 | -- | -0.0542 | 16.6 | -- | -- | -- | -- |
| 42.5 | 0.305 | 10.6 | 0.142 | 0.742 | -- | -- | -- | -0.0516 | 16.7 | -- | -- | -- | -- |
| 62.18 | 0.367 | 10.5 | 0.363 | -- | 0.945 | -- | -- | 0.0224 | -- | 1.101 | 1410 | -- | -- |
| 37.25 | 0.284 | 10.5 | -- | 0.752 | 0.735 | -- | -- | 0.0822 | 16.7 | 1.215 | 1434 | -- | -- |
| 71.76 | 0.396 | 10.6 | 0.114 | -- | -- | -- | -- | -0.071 | -- | -- | -- | -- | -- |
| 43.03 | 0.307 | 10.6 | -- | 0.74 | -- | -- | -- | -0.0674 | 16.7 | -- | -- | -- | -- |
| 64.4 | 0.374 | 10.5 | -- | -- | 0.76 | -- | -- | 0.0111 | -- | 1.826 | 1411 | -- | -- |
| 72.1 | 0.396 | 10.6 | -- | -- | -- | -- | -- | -0.0836 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.26 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 2 | 29.38 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 6 | 29.80 | radiation | 20 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 10 | 29.84 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 19 | 29.88 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 28 | 29.92 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 35 | 29.94 | temperature | 15 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 40 | 29.94 | humidity | 70 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 41 | 29.95 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 42 | 29.95 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 68 | 29.99 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 69 | 29.99 | temperature | 15 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 74 | 30.00 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 93 | 30.02 | temperature | 15 | 43200 | > th | dose independent | sin | 4 | NA |
| 118 | 30.05 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 130 | 30.07 | temperature | 15 | 43200 | < th | dose independent | sin | 5 | NA |
| 158 | 30.11 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 176 | 30.12 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 179 | 30.13 | temperature | 15 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 209 | 30.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 230 | 30.17 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 245 | 30.17 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 13 |
| 258 | 30.19 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 265 | 30.19 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 267 | 30.20 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 280 | 30.20 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 283 | 30.21 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 322 | 30.23 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 336 | 30.24 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 338 | 30.24 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 352 | 30.24 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 354 | 30.25 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 380 | 30.26 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 383 | 30.27 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 400 | 30.27 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 18 |
| 401 | 30.28 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 426 | 30.28 | humidity | 80 | 43200 | > th | dose dependent | rect. | 1 | 19 |
| 451 | 30.30 | humidity | 90 | 43200 | < th | dose independent | sin | 16 | NA |
| 455 | 30.30 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 513 | 30.32 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 17 |
| 540 | 30.33 | humidity | 80 | 43200 | > th | dose dependent | rect. | 5 | 21 |
| 598 | 30.35 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 604 | 30.36 | temperature | 15 | 43200 | > th | dose independent | no | NA | NA |
| 608 | 30.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 622 | 30.36 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 22 |
| 633 | 30.36 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 22 |
| 652 | 30.37 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 658 | 30.37 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 20 |
| 718 | 30.39 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 749 | 30.40 | temperature | 15 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 794 | 30.41 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 21 |
| 801 | 30.42 | temperature | 15 | 43200 | < th | dose independent | no | NA | NA |
| 820 | 30.42 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 835 | 30.43 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 876 | 30.43 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 23 |
| 901 | 30.44 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 935 | 30.45 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 966 | 30.46 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 980 | 30.47 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 15 |
| 993 | 30.47 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 995 | 30.47 | humidity | 80 | 43200 | > th | dose dependent | sin | 3 | NA |