BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0536000 Os08g0536000|AK071782
(374 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0536000 Similar to Pyruvate dehydrogenase E1 beta subu... 721 0.0
Os09g0509200 Similar to Pyruvate dehydrogenase E1 beta subu... 678 0.0
Os12g0616900 Similar to Pyruvate dehydrogenase E1 beta subu... 268 4e-72
Os03g0645100 Similar to Pyruvate dehydrogenase E1 beta subu... 260 1e-69
Os07g0170100 Similar to Branched chain alpha-keto acid dehy... 224 7e-59
>Os08g0536000 Similar to Pyruvate dehydrogenase E1 beta subunit isoform 1 (EC
1.2.4.1)
Length = 374
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/374 (95%), Positives = 356/374 (95%)
Query: 1 MLGIARRRLGSGCALGQLMQXXXXXXXXXXXXXXXXXXKEMTVREALNSALDEEMSADPS 60
MLGIARRRLGSGCALGQLMQ KEMTVREALNSALDEEMSADPS
Sbjct: 1 MLGIARRRLGSGCALGQLMQALRPAAAAAAARTYSAAAKEMTVREALNSALDEEMSADPS 60
Query: 61 VFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIGVGAAYQGLRPVVEFMT 120
VFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIGVGAAYQGLRPVVEFMT
Sbjct: 61 VFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIGVGAAYQGLRPVVEFMT 120
Query: 121 FNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGL 180
FNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGL
Sbjct: 121 FNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGL 180
Query: 181 KVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEQ 240
KVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEQ
Sbjct: 181 KVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEQ 240
Query: 241 EGKDVTITAFSKMVGYALQAAEILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTL 300
EGKDVTITAFSKMVGYALQAAEILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTL
Sbjct: 241 EGKDVTITAFSKMVGYALQAAEILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTL 300
Query: 301 EEGFPQHGVGAEICMSVVEDSFEYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAA 360
EEGFPQHGVGAEICMSVVEDSFEYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAA
Sbjct: 301 EEGFPQHGVGAEICMSVVEDSFEYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAA 360
Query: 361 KRACYRAVPMAATA 374
KRACYRAVPMAATA
Sbjct: 361 KRACYRAVPMAATA 374
>Os09g0509200 Similar to Pyruvate dehydrogenase E1 beta subunit isoform 3 (EC
1.2.4.1)
Length = 376
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/376 (89%), Positives = 349/376 (92%), Gaps = 2/376 (0%)
Query: 1 MLGIARRRLGSGCALGQLMQXX--XXXXXXXXXXXXXXXXKEMTVREALNSALDEEMSAD 58
MLG ARR+LGSG LGQ+++ KEMTVREALNSALDEEMSAD
Sbjct: 1 MLGAARRQLGSGPMLGQVLRRLRPATAAAADAARAYSAAAKEMTVREALNSALDEEMSAD 60
Query: 59 PSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIGVGAAYQGLRPVVEF 118
PSVFLMGEEVGEYQGAYKISKGLLDKYGP+RVLDTPITEAGFTGI VGAAYQGLRPVVEF
Sbjct: 61 PSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEF 120
Query: 119 MTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVP 178
MTFNFSMQAIDHIINSAAKSNYMSAGQI+VPIVFRGPNGAAAGVGAQHSQCYAAWYAHVP
Sbjct: 121 MTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVP 180
Query: 179 GLKVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKI 238
GLKVL PYSAEDARGLLKAAIRDPDPVVFLENELLYGESFP+SAEVLDSSF LPIGKAKI
Sbjct: 181 GLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKI 240
Query: 239 EQEGKDVTITAFSKMVGYALQAAEILSKEGISAEVINLRSIRPLDRATINASVRKTNRLV 298
E+EGKDVTITA+SKMVGYALQAA+ILSKEGISAEVINLRSIRPLDRATINASVRKTNRLV
Sbjct: 241 EREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLV 300
Query: 299 TLEEGFPQHGVGAEICMSVVEDSFEYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVR 358
T+EE FPQHG+GAEICMSVVE+SFEYLDAPVERIAGADVPMPYAANLERMAVPQV+DIVR
Sbjct: 301 TIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQVDDIVR 360
Query: 359 AAKRACYRAVPMAATA 374
AAKRACYRAVPMAATA
Sbjct: 361 AAKRACYRAVPMAATA 376
>Os12g0616900 Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment)
Length = 391
Score = 268 bits (685), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 208/326 (63%), Gaps = 4/326 (1%)
Query: 39 KEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEA 98
E+ + EAL AL EEM DP+V + GE+VG Y G+YK++KGL + +G RVLDTPI E
Sbjct: 69 HEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAEN 128
Query: 99 GFTGIGVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGA 158
F G+GVGAA +GLRP+VE M F + A + I N+ +Y S GQ +PIV RGP G
Sbjct: 129 SFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKIPIVIRGPGGV 188
Query: 159 AAGVGAQHSQCYAAWYAHVPGLKVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYGESF 218
+GA+HSQ +++ +PGL+++ + +A+GL+KAAIR +PVV E+ LLY
Sbjct: 189 GRQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYN--- 245
Query: 219 PVSAEVLDSSFCLPIGKAKIEQEGKDVTITAFSKMVGYALQAAEILSKEGISAEVINLRS 278
+ ++ D + + +A++ + G+ VTI +S+M + +QAA+ L +G EVI++RS
Sbjct: 246 -LKEKIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRS 304
Query: 279 IRPLDRATINASVRKTNRLVTLEEGFPQHGVGAEICMSVVEDSFEYLDAPVERIAGADVP 338
++P D TI S++KT+R++ +EE G+GA + +++++ ++YLDAP+ ++ DVP
Sbjct: 305 LKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVP 364
Query: 339 MPYAANLERMAVPQVEDIVRAAKRAC 364
PYAA LE V Q IV A ++ C
Sbjct: 365 TPYAATLEDATVVQPAQIVAAVEQIC 390
>Os03g0645100 Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment)
Length = 307
Score = 260 bits (664), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 200/310 (64%), Gaps = 4/310 (1%)
Query: 55 MSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIGVGAAYQGLRP 114
M DP+V + GE+VG Y G+YK++KGL + +G RVLDTPI E FTG+GVGAA +GLRP
Sbjct: 1 MKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRP 60
Query: 115 VVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWY 174
VVE M F + A + I N+ +Y S GQ +PIV RGP G +GA+HSQ +++
Sbjct: 61 VVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYF 120
Query: 175 AHVPGLKVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIG 234
+PGL+++ + +A+GL+KAAIR +PVV E+ LLY + ++ D + L +
Sbjct: 121 QSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYN----LKEKIPDEEYVLCLE 176
Query: 235 KAKIEQEGKDVTITAFSKMVGYALQAAEILSKEGISAEVINLRSIRPLDRATINASVRKT 294
+A++ + G+ VTI +S+M + +QAA+ L +G EVI++RS++P D TI S++KT
Sbjct: 177 EAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKT 236
Query: 295 NRLVTLEEGFPQHGVGAEICMSVVEDSFEYLDAPVERIAGADVPMPYAANLERMAVPQVE 354
+R++ +EE G+GA + +++++ ++YLDAP+ ++ DVP PYAA LE V Q
Sbjct: 237 HRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPYAAPLEDATVVQPA 296
Query: 355 DIVRAAKRAC 364
IV A ++ C
Sbjct: 297 QIVAAVEQIC 306
>Os07g0170100 Similar to Branched chain alpha-keto acid dehydrogenase E1 beta
subunit
Length = 370
Score = 224 bits (572), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 184/324 (56%), Gaps = 7/324 (2%)
Query: 39 KEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEA 98
KE+ + A+N AL + DP ++ GE+VG + G ++ + GL D++G +RV +TP+ E
Sbjct: 48 KEVNLFTAINQALHIALDTDPRSYVFGEDVG-FGGVFRCTTGLADRFGRNRVFNTPLCEQ 106
Query: 99 GFTGIGVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVP-IVFRGPNG 157
G G VG A G R + E ++ A D I+N AAK Y S + N + R P G
Sbjct: 107 GIAGFAVGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNEFNCGGLTIRSPYG 166
Query: 158 AAAGVGAQHSQCYAAWYAHVPGLKVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYGES 217
A G HSQ A++ HVPGLKV+ P S +A+GLL A+IRDP+PVVF E + LY +
Sbjct: 167 AVGHGGHYHSQSPEAFFCHVPGLKVIIPRSPREAKGLLLASIRDPNPVVFFEPKWLYRLA 226
Query: 218 FPVSAEVLDSSFCLPIGKAKIEQEGKDVTITAFSKMVGYALQAAEILSKEGISAEVINLR 277
EV + + LP+ +A++ ++G D+T+ + + +A E +K+GIS E+I+LR
Sbjct: 227 V---EEVPEEDYMLPLSEAEVIRKGSDITLIGWGAQLAVLEEACEDAAKDGISCELIDLR 283
Query: 278 SIRPLDRATINASVRKTNRLVTLEEGFPQHGVGAEICMSVVEDSFEYLDAPVERIAGADV 337
++ P D+ T+ ASV KT +L+ E G GAEI S+ E F+ L+APV R+ G D
Sbjct: 284 TLIPWDKETVEASVSKTGKLLVSHEAPITGGFGAEIAASITERCFQRLEAPVARVCGLDT 343
Query: 338 PMPYAANLERMAVPQVEDIVRAAK 361
P P E +P ++ A K
Sbjct: 344 PFPLV--YETFYMPTKNKVLDAIK 365
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,223,109
Number of extensions: 451412
Number of successful extensions: 972
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 965
Number of HSP's successfully gapped: 5
Length of query: 374
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 272
Effective length of database: 11,709,973
Effective search space: 3185112656
Effective search space used: 3185112656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)