Os07g0170100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Branched chain alpha-keto acid dehydrogenase E1 beta subunit.
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Os07g0170100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Branched chain alpha-keto acid dehydrogenase E1 beta subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.32 | 0.515 | 8.8 | -0.0816 | 0.851 | -0.774 | -0.527 | -2.27 | -0.402 | 14.4 | -0.04882 | 4558 | -- | -- |
| 124.44 | 0.52 | 8.76 | -0.0937 | 0.849 | -1.06 | -0.578 | -- | -0.39 | 14.4 | 0.2767 | 4560 | -- | -- |
| 121.32 | 0.513 | 8.8 | -0.1 | 0.849 | -0.764 | -- | -2.25 | -0.405 | 14.3 | -0.07179 | 4557 | -- | -- |
| 125.27 | 0.521 | 8.76 | -0.0877 | 0.862 | -1.08 | -- | -- | -0.41 | 14.3 | 0.2805 | 4560 | -- | -- |
| 164.09 | 0.597 | 8.8 | -0.143 | -- | -0.729 | -- | -2.51 | -0.413 | -- | -0.05621 | 4557 | -- | -- |
| 149.64 | 0.573 | 8.73 | -0.43 | 0.868 | -- | -0.327 | -- | -0.305 | 14.3 | -- | -- | -- | -- |
| 150.03 | 0.574 | 8.73 | -0.439 | 0.867 | -- | -- | -- | -0.307 | 14.3 | -- | -- | -- | -- |
| 168.66 | 0.605 | 8.77 | -0.145 | -- | -1.13 | -- | -- | -0.43 | -- | 0.3472 | 4560 | -- | -- |
| 125.48 | 0.522 | 8.76 | -- | 0.857 | -1.09 | -- | -- | -0.4 | 14.3 | 0.3245 | 4560 | -- | -- |
| 194.67 | 0.652 | 8.74 | -0.476 | -- | -- | -- | -- | -0.328 | -- | -- | -- | -- | -- |
| 155.11 | 0.583 | 8.72 | -- | 0.875 | -- | -- | -- | -0.258 | 14.3 | -- | -- | -- | -- |
| 166.41 | 0.601 | 8.76 | -- | -- | -1.36 | -- | -- | -0.407 | -- | 0.3609 | 2451 | -- | -- |
| 200.64 | 0.661 | 8.73 | -- | -- | -- | -- | -- | -0.275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.87 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 2 | 113.95 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 3 | 113.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 4 | 113.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 6 | 114.19 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 7 | 114.19 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 8 | 114.21 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 9 | 114.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 10 | 114.36 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 11 | 114.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 13 | 114.36 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 5 |
| 20 | 114.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 21 | 114.57 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 22 | 114.57 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 6 |
| 74 | 115.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 75 | 115.24 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 84 | 115.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 4 |
| 101 | 115.51 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 116 | 115.65 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 159 | 116.14 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 18 | NA |
| 165 | 116.17 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 19 | NA |
| 171 | 116.19 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 19 | NA |
| 174 | 116.19 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 19 | NA |
| 210 | 116.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 16 |
| 219 | 116.44 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 18 |
| 260 | 116.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 287 | 116.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 16 |
| 314 | 116.83 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 350 | 116.95 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 386 | 117.08 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 435 | 117.26 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 472 | 117.40 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 513 | 117.56 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 517 | 117.59 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 528 | 117.60 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 543 | 117.70 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 547 | 117.73 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 18 |
| 549 | 117.73 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 18 |
| 550 | 117.74 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 18 |
| 551 | 117.74 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 18 |
| 552 | 117.75 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 18 |
| 556 | 117.77 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 8 |
| 578 | 117.88 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 580 | 117.88 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 18 |
| 582 | 117.89 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 586 | 117.90 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 587 | 117.90 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 621 | 117.99 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 636 | 118.05 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 666 | 118.13 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 688 | 118.25 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 691 | 118.26 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 723 | 118.37 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 727 | 118.39 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 736 | 118.45 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 10 |
| 848 | 118.95 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 850 | 118.97 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 909 | 119.18 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 3 | NA |
| 911 | 119.18 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 10 |
| 930 | 119.25 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 994 | 119.53 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |