BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0170100 Os07g0170100|AK105761
(370 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0170100 Similar to Branched chain alpha-keto acid dehy... 647 0.0
Os09g0509200 Similar to Pyruvate dehydrogenase E1 beta subu... 207 9e-54
Os08g0536000 Similar to Pyruvate dehydrogenase E1 beta subu... 204 1e-52
Os12g0616900 Similar to Pyruvate dehydrogenase E1 beta subu... 176 2e-44
Os03g0645100 Similar to Pyruvate dehydrogenase E1 beta subu... 176 3e-44
>Os07g0170100 Similar to Branched chain alpha-keto acid dehydrogenase E1 beta
subunit
Length = 370
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/370 (87%), Positives = 322/370 (87%)
Query: 1 MAAKSLREXXXXXXXXXXXXXCFSGDXXXXXXXXXXXXXXXXXXXXXXXVNLFTAINQAL 60
MAAKSLRE CFSGD VNLFTAINQAL
Sbjct: 1 MAAKSLREIRRAAAAGIGSRRCFSGDAAAAAAAAAGVAEGKVGGGAGKEVNLFTAINQAL 60
Query: 61 HIALDTDPRSYXXXXXXXXXXXXRCTTGLADRFGRNRVFNTPLCEQGIAGFAVGLAAMGN 120
HIALDTDPRSY RCTTGLADRFGRNRVFNTPLCEQGIAGFAVGLAAMGN
Sbjct: 61 HIALDTDPRSYVFGEDVGFGGVFRCTTGLADRFGRNRVFNTPLCEQGIAGFAVGLAAMGN 120
Query: 121 RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNEFNCGGLTIRSPYGAVGHGGHYHSQSPE 180
RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNEFNCGGLTIRSPYGAVGHGGHYHSQSPE
Sbjct: 121 RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNEFNCGGLTIRSPYGAVGHGGHYHSQSPE 180
Query: 181 AFFCHVPGLKVIIPRSPREAKGLLLASIRDPNPVVFFEPKWLYRLAVEEVPEEDYMLPLS 240
AFFCHVPGLKVIIPRSPREAKGLLLASIRDPNPVVFFEPKWLYRLAVEEVPEEDYMLPLS
Sbjct: 181 AFFCHVPGLKVIIPRSPREAKGLLLASIRDPNPVVFFEPKWLYRLAVEEVPEEDYMLPLS 240
Query: 241 EAEVIRKGSDITLIGWGAQLAVLEEACEDAAKDGISCELIDLRTLIPWDKETVEASVSKT 300
EAEVIRKGSDITLIGWGAQLAVLEEACEDAAKDGISCELIDLRTLIPWDKETVEASVSKT
Sbjct: 241 EAEVIRKGSDITLIGWGAQLAVLEEACEDAAKDGISCELIDLRTLIPWDKETVEASVSKT 300
Query: 301 GKLLVSHEAPITGGFGAEIAASITERCFQRLEAPVARVCGLDTPFPLVYETFYMPTKNKV 360
GKLLVSHEAPITGGFGAEIAASITERCFQRLEAPVARVCGLDTPFPLVYETFYMPTKNKV
Sbjct: 301 GKLLVSHEAPITGGFGAEIAASITERCFQRLEAPVARVCGLDTPFPLVYETFYMPTKNKV 360
Query: 361 LDAIKATVNY 370
LDAIKATVNY
Sbjct: 361 LDAIKATVNY 370
>Os09g0509200 Similar to Pyruvate dehydrogenase E1 beta subunit isoform 3 (EC
1.2.4.1)
Length = 376
Score = 207 bits (527), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 174/317 (54%), Gaps = 7/317 (2%)
Query: 55 AINQALHIALDTDPRSYXXXXXXXXXX-XXRCTTGLADRFGRNRVFNTPLCEQGIAGFAV 113
A+N AL + DP + + + GL D++G RV +TP+ E G G AV
Sbjct: 48 ALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAV 107
Query: 114 GLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNEFNCGGLTIRSPYGAVGHGGH 173
G A G R + E ++ A D I+N AAK Y S + + + R P GA G
Sbjct: 108 GAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVP-IVFRGPNGAAAGVGA 166
Query: 174 YHSQSPEAFFCHVPGLKVIIPRSPREAKGLLLASIRDPNPVVFFEPKWLYRLAV---EEV 230
HSQ A++ HVPGLKV++P S +A+GLL A+IRDP+PVVF E + LY + EV
Sbjct: 167 QHSQCYAAWYAHVPGLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEV 226
Query: 231 PEEDYMLPLSEAEVIRKGSDITLIGWGAQLAVLEEACEDAAKDGISCELIDLRTLIPWDK 290
+ + LP+ +A++ R+G D+T+ + + +A + +K+GIS E+I+LR++ P D+
Sbjct: 227 LDSSFALPIGKAKIEREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDR 286
Query: 291 ETVEASVSKTGKLLVSHEAPITGGFGAEIAASITERCFQRLEAPVARVCGLDTPFPLV-- 348
T+ ASV KT +L+ E+ G GAEI S+ E F+ L+APV R+ G D P P
Sbjct: 287 ATINASVRKTNRLVTIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAAN 346
Query: 349 YETFYMPTKNKVLDAIK 365
E +P + ++ A K
Sbjct: 347 LERMAVPQVDDIVRAAK 363
>Os08g0536000 Similar to Pyruvate dehydrogenase E1 beta subunit isoform 1 (EC
1.2.4.1)
Length = 374
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 171/317 (53%), Gaps = 7/317 (2%)
Query: 55 AINQALHIALDTDPRSYXXXXXXXXXX-XXRCTTGLADRFGRNRVFNTPLCEQGIAGFAV 113
A+N AL + DP + + + GL D++G +RV +TP+ E G G V
Sbjct: 46 ALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIGV 105
Query: 114 GLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNEFNCGGLTIRSPYGAVGHGGH 173
G A G R + E ++ A D I+N AAK Y S + N + R P GA G
Sbjct: 106 GAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVP-IVFRGPNGAAAGVGA 164
Query: 174 YHSQSPEAFFCHVPGLKVIIPRSPREAKGLLLASIRDPNPVVFFEPKWLYRLAV---EEV 230
HSQ A++ HVPGLKV+ P S +A+GLL A+IRDP+PVVF E + LY + EV
Sbjct: 165 QHSQCYAAWYAHVPGLKVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEV 224
Query: 231 PEEDYMLPLSEAEVIRKGSDITLIGWGAQLAVLEEACEDAAKDGISCELIDLRTLIPWDK 290
+ + LP+ +A++ ++G D+T+ + + +A E +K+GIS E+I+LR++ P D+
Sbjct: 225 LDSSFCLPIGKAKIEQEGKDVTITAFSKMVGYALQAAEILSKEGISAEVINLRSIRPLDR 284
Query: 291 ETVEASVSKTGKLLVSHEAPITGGFGAEIAASITERCFQRLEAPVARVCGLDTPFPLV-- 348
T+ ASV KT +L+ E G GAEI S+ E F+ L+APV R+ G D P P
Sbjct: 285 ATINASVRKTNRLVTLEEGFPQHGVGAEICMSVVEDSFEYLDAPVERIAGADVPMPYAAN 344
Query: 349 YETFYMPTKNKVLDAIK 365
E +P ++ A K
Sbjct: 345 LERMAVPQVEDIVRAAK 361
>Os12g0616900 Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment)
Length = 391
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 157/298 (52%), Gaps = 3/298 (1%)
Query: 50 VNLFTAINQALHIALDTDPR-SYXXXXXXXXXXXXRCTTGLADRFGRNRVFNTPLCEQGI 108
V LF A+ +AL + DP + T GLA+ FG RV +TP+ E
Sbjct: 71 VLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSF 130
Query: 109 AGFAVGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNEFNCGGLTIRSPYGAV 168
AG VG A G R I E ++ A++QI N Y SG +F + IR P G
Sbjct: 131 AGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKIP-IVIRGPGGVG 189
Query: 169 GHGGHYHSQSPEAFFCHVPGLKVIIPRSPREAKGLLLASIRDPNPVVFFEPKWLYRLAVE 228
G HSQ E++F +PGL+++ +P AKGL+ A+IR NPVV FE LY L E
Sbjct: 190 RQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNLK-E 248
Query: 229 EVPEEDYMLPLSEAEVIRKGSDITLIGWGAQLAVLEEACEDAAKDGISCELIDLRTLIPW 288
++P+E+Y+ L EAE++R G +T++ + + +A + G E+ID+R+L P+
Sbjct: 249 KIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF 308
Query: 289 DKETVEASVSKTGKLLVSHEAPITGGFGAEIAASITERCFQRLEAPVARVCGLDTPFP 346
D T+ S+ KT ++L+ E TGG GA + ++I + + L+AP+ + D P P
Sbjct: 309 DLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTP 366
>Os03g0645100 Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment)
Length = 307
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 146/263 (55%), Gaps = 2/263 (0%)
Query: 84 RCTTGLADRFGRNRVFNTPLCEQGIAGFAVGLAAMGNRAIAEIQFADYIFPAFDQIVNEA 143
+ T GLA+ FG RV +TP+ E G VG A G R + E ++ A++QI N
Sbjct: 22 KVTKGLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRPVVEGMNMGFLLLAYNQISNNC 81
Query: 144 AKFRYRSGNEFNCGGLTIRSPYGAVGHGGHYHSQSPEAFFCHVPGLKVIIPRSPREAKGL 203
Y SG +F + IR P G G HSQ E++F +PGL+++ +P AKGL
Sbjct: 82 GMLHYTSGGQFKIP-IVIRGPGGVGRQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGL 140
Query: 204 LLASIRDPNPVVFFEPKWLYRLAVEEVPEEDYMLPLSEAEVIRKGSDITLIGWGAQLAVL 263
+ A+IR NPVV FE LY L E++P+E+Y+L L EAE++R G +T++ + +
Sbjct: 141 MKAAIRSENPVVLFEHVLLYNLK-EKIPDEEYVLCLEEAEMVRPGEHVTILTYSRMRYHV 199
Query: 264 EEACEDAAKDGISCELIDLRTLIPWDKETVEASVSKTGKLLVSHEAPITGGFGAEIAASI 323
+A + G E+ID+R+L P+D T+ S+ KT ++L+ E TGG GA + ++I
Sbjct: 200 MQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAI 259
Query: 324 TERCFQRLEAPVARVCGLDTPFP 346
+ + L+AP+ + D P P
Sbjct: 260 IDNFWDYLDAPIMCLSSQDVPTP 282
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,019,125
Number of extensions: 467857
Number of successful extensions: 860
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 852
Number of HSP's successfully gapped: 5
Length of query: 370
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 268
Effective length of database: 11,709,973
Effective search space: 3138272764
Effective search space used: 3138272764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)