Os09g0509200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyruvate dehydrogenase E1 beta subunit isoform 3 (EC 1.2.4.1).
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Os09g0509200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyruvate dehydrogenase E1 beta subunit isoform 3 (EC 1.2.4.1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.79 | 0.378 | 11.4 | 0.256 | 3.02 | 1.36 | 0.634 | 0.219 | 0.0192 | 14.9 | 24.2 | 263 | -- | -- |
| 64.8 | 0.375 | 11.4 | 0.284 | 3.02 | 1.33 | 0.579 | -- | 0.0216 | 14.8 | 24.16 | 240 | -- | -- |
| 66.09 | 0.379 | 11.4 | 0.249 | 3.03 | 1.37 | -- | 0.165 | 0.0101 | 14.9 | 24.1 | 240 | -- | -- |
| 65.96 | 0.378 | 11.4 | 0.3 | 3.03 | 1.33 | -- | -- | 0.0264 | 14.8 | 24.15 | 240 | -- | -- |
| 462.4 | 1.01 | 11.5 | -0.286 | -- | -2.59 | -- | -2.54 | -0.534 | -- | 42.47 | 1095 | -- | -- |
| 89.46 | 0.443 | 11.4 | -0.0471 | 2.87 | -- | 0.632 | -- | -0.208 | 14.8 | -- | -- | -- | -- |
| 90.83 | 0.446 | 11.4 | -0.0322 | 2.87 | -- | -- | -- | -0.205 | 14.8 | -- | -- | -- | -- |
| 467.82 | 1.01 | 11.5 | -0.638 | -- | -2.41 | -- | -- | -0.641 | -- | 32.56 | 1097 | -- | -- |
| 68.32 | 0.385 | 11.4 | -- | 3.04 | 1.27 | -- | -- | 0.0114 | 14.9 | 24.2 | 244 | -- | -- |
| 568.58 | 1.11 | 11.4 | -0.155 | -- | -- | -- | -- | -0.278 | -- | -- | -- | -- | -- |
| 90.86 | 0.446 | 11.4 | -- | 2.87 | -- | -- | -- | -0.201 | 14.8 | -- | -- | -- | -- |
| 477.94 | 1.02 | 11.5 | -- | -- | -2.23 | -- | -- | -0.546 | -- | 32.56 | 1097 | -- | -- |
| 569.21 | 1.11 | 11.4 | -- | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 10 |
| 2 | 51.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 12 | 53.54 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 18 |
| 21 | 54.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 22 | 54.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 40 | 55.52 | temperature | 20 | 10 | > th | dose independent | rect. | 10 | 20 |
| 44 | 55.57 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 9 |
| 48 | 55.90 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 10 |
| 64 | 56.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 79 | 56.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 15 |
| 80 | 56.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 9 |
| 156 | 58.14 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 262 | 59.92 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 276 | 60.10 | temperature | 25 | 270 | < th | dose dependent | sin | 12 | NA |
| 353 | 61.29 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 5 |
| 367 | 61.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 373 | 61.46 | temperature | 10 | 90 | > th | dose dependent | rect. | 10 | 19 |
| 435 | 62.15 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 20 |
| 869 | 65.41 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 896 | 65.55 | temperature | 15 | 270 | > th | dose dependent | sin | 11 | NA |
| 979 | 65.88 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 11 | 18 |