BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0509200 Os09g0509200|AK069525
(376 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0509200 Similar to Pyruvate dehydrogenase E1 beta subu... 713 0.0
Os08g0536000 Similar to Pyruvate dehydrogenase E1 beta subu... 677 0.0
Os12g0616900 Similar to Pyruvate dehydrogenase E1 beta subu... 271 5e-73
Os03g0645100 Similar to Pyruvate dehydrogenase E1 beta subu... 263 2e-70
Os07g0170100 Similar to Branched chain alpha-keto acid dehy... 229 3e-60
>Os09g0509200 Similar to Pyruvate dehydrogenase E1 beta subunit isoform 3 (EC
1.2.4.1)
Length = 376
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/376 (94%), Positives = 355/376 (94%)
Query: 1 MLGAARRQLGSGPMLGQVLXXXXXXXXXXXXXXXXXXXXXKEMTVREALNSALDEEMSAD 60
MLGAARRQLGSGPMLGQVL KEMTVREALNSALDEEMSAD
Sbjct: 1 MLGAARRQLGSGPMLGQVLRRLRPATAAAADAARAYSAAAKEMTVREALNSALDEEMSAD 60
Query: 61 PSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEF 120
PSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEF
Sbjct: 61 PSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEF 120
Query: 121 MTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVP 180
MTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVP
Sbjct: 121 MTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVP 180
Query: 181 GLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKI 240
GLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKI
Sbjct: 181 GLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKI 240
Query: 241 EREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLV 300
EREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLV
Sbjct: 241 EREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLV 300
Query: 301 TIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQVDDIVR 360
TIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQVDDIVR
Sbjct: 301 TIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQVDDIVR 360
Query: 361 AAKRACYRAVPMAATA 376
AAKRACYRAVPMAATA
Sbjct: 361 AAKRACYRAVPMAATA 376
>Os08g0536000 Similar to Pyruvate dehydrogenase E1 beta subunit isoform 1 (EC
1.2.4.1)
Length = 374
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/376 (89%), Positives = 348/376 (92%), Gaps = 2/376 (0%)
Query: 1 MLGAARRQLGSGPMLGQVLXXXXXXXXXXXXXXXXXXXXXKEMTVREALNSALDEEMSAD 60
MLG ARR+LGSG LGQ++ KEMTVREALNSALDEEMSAD
Sbjct: 1 MLGIARRRLGSGCALGQLMQALRPAAAAAAARTYSAAA--KEMTVREALNSALDEEMSAD 58
Query: 61 PSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEF 120
PSVFLMGEEVGEYQGAYKISKGLLDKYGP+RVLDTPITEAGFTGI VGAAYQGLRPVVEF
Sbjct: 59 PSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVLDTPITEAGFTGIGVGAAYQGLRPVVEF 118
Query: 121 MTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVP 180
MTFNFSMQAIDHIINSAAKSNYMSAGQI+VPIVFRGPNGAAAGVGAQHSQCYAAWYAHVP
Sbjct: 119 MTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVP 178
Query: 181 GLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIGKAKI 240
GLKVL PYSAEDARGLLKAAIRDPDPVVFLENELLYGESFP+SAEVLDSSF LPIGKAKI
Sbjct: 179 GLKVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKI 238
Query: 241 EREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKTNRLV 300
E+EGKDVTITA+SKMVGYALQAA+ILSKEGISAEVINLRSIRPLDRATINASVRKTNRLV
Sbjct: 239 EQEGKDVTITAFSKMVGYALQAAEILSKEGISAEVINLRSIRPLDRATINASVRKTNRLV 298
Query: 301 TIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQVDDIVR 360
T+EE FPQHG+GAEICMSVVE+SFEYLDAPVERIAGADVPMPYAANLERMAVPQV+DIVR
Sbjct: 299 TLEEGFPQHGVGAEICMSVVEDSFEYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVR 358
Query: 361 AAKRACYRAVPMAATA 376
AAKRACYRAVPMAATA
Sbjct: 359 AAKRACYRAVPMAATA 374
>Os12g0616900 Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment)
Length = 391
Score = 271 bits (693), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 205/325 (63%), Gaps = 4/325 (1%)
Query: 42 EMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAG 101
E+ + EAL AL EEM DP+V + GE+VG Y G+YK++KGL + +G RVLDTPI E
Sbjct: 70 EVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENS 129
Query: 102 FTGIAVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAA 161
F G+ VGAA +GLRP+VE M F + A + I N+ +Y S GQ +PIV RGP G
Sbjct: 130 FAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKIPIVIRGPGGVG 189
Query: 162 AGVGAQHSQCYAAWYAHVPGLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFP 221
+GA+HSQ +++ +PGL+++ + +A+GL+KAAIR +PVV E+ LLY
Sbjct: 190 RQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYN---- 245
Query: 222 ISAEVLDSSFALPIGKAKIEREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSI 281
+ ++ D + + +A++ R G+ VTI YS+M + +QAA L +G EVI++RS+
Sbjct: 246 LKEKIPDEEYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL 305
Query: 282 RPLDRATINASVRKTNRLVTIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPM 341
+P D TI S++KT+R++ +EE GIGA + ++++ ++YLDAP+ ++ DVP
Sbjct: 306 KPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPT 365
Query: 342 PYAANLERMAVPQVDDIVRAAKRAC 366
PYAA LE V Q IV A ++ C
Sbjct: 366 PYAATLEDATVVQPAQIVAAVEQIC 390
>Os03g0645100 Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment)
Length = 307
Score = 263 bits (672), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 197/310 (63%), Gaps = 4/310 (1%)
Query: 57 MSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRP 116
M DP+V + GE+VG Y G+YK++KGL + +G RVLDTPI E FTG+ VGAA +GLRP
Sbjct: 1 MKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRP 60
Query: 117 VVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWY 176
VVE M F + A + I N+ +Y S GQ +PIV RGP G +GA+HSQ +++
Sbjct: 61 VVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYF 120
Query: 177 AHVPGLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDSSFALPIG 236
+PGL+++ + +A+GL+KAAIR +PVV E+ LLY + ++ D + L +
Sbjct: 121 QSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYN----LKEKIPDEEYVLCLE 176
Query: 237 KAKIEREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLRSIRPLDRATINASVRKT 296
+A++ R G+ VTI YS+M + +QAA L +G EVI++RS++P D TI S++KT
Sbjct: 177 EAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKT 236
Query: 297 NRLVTIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQVD 356
+R++ +EE GIGA + ++++ ++YLDAP+ ++ DVP PYAA LE V Q
Sbjct: 237 HRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPYAAPLEDATVVQPA 296
Query: 357 DIVRAAKRAC 366
IV A ++ C
Sbjct: 297 QIVAAVEQIC 306
>Os07g0170100 Similar to Branched chain alpha-keto acid dehydrogenase E1 beta
subunit
Length = 370
Score = 229 bits (583), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 187/324 (57%), Gaps = 7/324 (2%)
Query: 41 KEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEA 100
KE+ + A+N AL + DP ++ GE+VG + G ++ + GL D++G RV +TP+ E
Sbjct: 48 KEVNLFTAINQALHIALDTDPRSYVFGEDVG-FGGVFRCTTGLADRFGRNRVFNTPLCEQ 106
Query: 101 GFTGIAVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVP-IVFRGPNG 159
G G AVG A G R + E ++ A D I+N AAK Y S + + + R P G
Sbjct: 107 GIAGFAVGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNEFNCGGLTIRSPYG 166
Query: 160 AAAGVGAQHSQCYAAWYAHVPGLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGES 219
A G HSQ A++ HVPGLKV++P S +A+GLL A+IRDP+PVVF E + LY +
Sbjct: 167 AVGHGGHYHSQSPEAFFCHVPGLKVIIPRSPREAKGLLLASIRDPNPVVFFEPKWLYRLA 226
Query: 220 FPISAEVLDSSFALPIGKAKIEREGKDVTITAYSKMVGYALQAADILSKEGISAEVINLR 279
EV + + LP+ +A++ R+G D+T+ + + +A + +K+GIS E+I+LR
Sbjct: 227 V---EEVPEEDYMLPLSEAEVIRKGSDITLIGWGAQLAVLEEACEDAAKDGISCELIDLR 283
Query: 280 SIRPLDRATINASVRKTNRLVTIEESFPQHGIGAEICMSVVEESFEYLDAPVERIAGADV 339
++ P D+ T+ ASV KT +L+ E+ G GAEI S+ E F+ L+APV R+ G D
Sbjct: 284 TLIPWDKETVEASVSKTGKLLVSHEAPITGGFGAEIAASITERCFQRLEAPVARVCGLDT 343
Query: 340 PMPYAANLERMAVPQVDDIVRAAK 363
P P E +P + ++ A K
Sbjct: 344 PFPLV--YETFYMPTKNKVLDAIK 365
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,005,776
Number of extensions: 432481
Number of successful extensions: 936
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 929
Number of HSP's successfully gapped: 5
Length of query: 376
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 274
Effective length of database: 11,709,973
Effective search space: 3208532602
Effective search space used: 3208532602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)