BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0612300 Os12g0612300|AK070162
(579 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0612300 Conserved hypothetical protein 1145 0.0
Os07g0147800 Conserved hypothetical protein 234 2e-61
Os09g0133800 Conserved hypothetical protein 170 3e-42
Os03g0784500 Conserved hypothetical protein 100 5e-21
Os04g0521600 Conserved hypothetical protein 99 9e-21
>Os12g0612300 Conserved hypothetical protein
Length = 579
Score = 1145 bits (2961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/579 (97%), Positives = 567/579 (97%)
Query: 1 MEAAESLEYELQKEVSNIMIQSYITSMRREFETKLWENQNCISTLNKNWKEKISKIAALR 60
MEAAESLEYELQKEVSNIMIQSYITSMRREFETKLWENQNCISTLNKNWKEKISKIAALR
Sbjct: 1 MEAAESLEYELQKEVSNIMIQSYITSMRREFETKLWENQNCISTLNKNWKEKISKIAALR 60
Query: 61 DELSTIYSVVSASESGVFSSHGSHEKVEELNFLKMKDDNESSITERTTDSGELMFDIPDF 120
DELSTIYSVVSASESGVFSSHGSHEKVEELNFLKMKDDNESSITERTTDSGELMFDIPDF
Sbjct: 61 DELSTIYSVVSASESGVFSSHGSHEKVEELNFLKMKDDNESSITERTTDSGELMFDIPDF 120
Query: 121 SLLKHMPSEEVTNFLKSEWLKLRRQHESELHEKTEELFRLKREFAKDIALLPSRKERELE 180
SLLKHMPSEEVTNFLKSEWLKLRRQHESELHEKTEELFRLKREFAKDIALLPSRKERELE
Sbjct: 121 SLLKHMPSEEVTNFLKSEWLKLRRQHESELHEKTEELFRLKREFAKDIALLPSRKERELE 180
Query: 181 IIKSKLLQSISKLDEITLREDNPYCDNYDDAEVCGFEDRIGSLLHENEQLQGLLADKKMV 240
IIKSKLLQSISKLDEITLREDNPYCDNYDDAEVCGFEDRIGSLLHENEQLQGLLADKKMV
Sbjct: 181 IIKSKLLQSISKLDEITLREDNPYCDNYDDAEVCGFEDRIGSLLHENEQLQGLLADKKMV 240
Query: 241 AKHLSLQVLDAERKMAQHSLSELKLVKQVEKLSHELEDLKIESHIKDLLELSTLREVFDN 300
AKHLSLQVLDAERKMAQHSLSELKLVKQVEKLSHELEDLKIESHIKDLLELSTLREVFDN
Sbjct: 241 AKHLSLQVLDAERKMAQHSLSELKLVKQVEKLSHELEDLKIESHIKDLLELSTLREVFDN 300
Query: 301 YENHIDDANQEETFLRELLIEKEEQLSIMYEDRQKLKYENNQLVAIAGSTLMQHHEQVNL 360
YENHIDDANQEETFLRELLIEKEEQLSIMYEDRQKLKYENNQLVAIAGSTLMQHHEQVNL
Sbjct: 301 YENHIDDANQEETFLRELLIEKEEQLSIMYEDRQKLKYENNQLVAIAGSTLMQHHEQVNL 360
Query: 361 VNDLTNFREKVCEQELLILXXXXXXXXXXXXLYEALQQINVCKQEIHGLTDNLTAMSIAL 420
VNDLTNFREKVCEQELLIL LYEALQQINVCKQEIHGLTDNLTAMSIAL
Sbjct: 361 VNDLTNFREKVCEQELLILESKSESNSMKSSLYEALQQINVCKQEIHGLTDNLTAMSIAL 420
Query: 421 EEAKEQNASLDATIQEMKKTSAPSINSHKGQAGHLEYALVSMEKLSKSYSDFESRLAQSM 480
EEAKEQNASLDATIQEMKKTSAPSINSHKGQAGHLEYALVSMEKLSKSYSDFESRLAQSM
Sbjct: 421 EEAKEQNASLDATIQEMKKTSAPSINSHKGQAGHLEYALVSMEKLSKSYSDFESRLAQSM 480
Query: 481 KRNEIRLTNIICQFNPLVQQVAVLKKKEFWYKQILEIKCSNLQKAEAEVDILGDEVDALL 540
KRNEIRLTNIICQFNPLVQQVAVLKKKEFWYKQILEIKCSNLQKAEAEVDILGDEVDALL
Sbjct: 481 KRNEIRLTNIICQFNPLVQQVAVLKKKEFWYKQILEIKCSNLQKAEAEVDILGDEVDALL 540
Query: 541 SILGKIYIALDHYSPVLKHYPGVTEILNLVQKALKGESI 579
SILGKIYIALDHYSPVLKHYPGVTEILNLVQKALKGESI
Sbjct: 541 SILGKIYIALDHYSPVLKHYPGVTEILNLVQKALKGESI 579
>Os07g0147800 Conserved hypothetical protein
Length = 780
Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 193/589 (32%), Positives = 299/589 (50%), Gaps = 62/589 (10%)
Query: 8 EYELQKEVSNIMIQSYITSMRREFETKLWENQNCISTLNKNWKEKISKIAALRDELSTIY 67
E+E+Q EV++IMI I S++ E E KL+E + ++TL KNWKE + + A+ +EL I
Sbjct: 195 EHEMQLEVTSIMIGDCIKSLQDELERKLYEQSSIVNTLKKNWKETVVQCGAIHEELIDIA 254
Query: 68 SVVSASES------------GVFSSHGSHE----KVEELNFLKMKDDNESSITERTTDSG 111
++ SE G +SS H+ K E ++N SS T+++
Sbjct: 255 DMLLPSEEESNILNSKHEHFGNWSSGWKHKFFGKKSGEERTPSSNEENISSATQKSVCPR 314
Query: 112 ELMFDIPDFSLLKHMPSEEVTNFLKSEWLKLRRQHESELHEKTEELFRLKREFAKDIALL 171
E++ + DF LK M EE+ + + E KL+R HE L EKTEELF+ KRE L
Sbjct: 315 EVISEKSDFRHLKGMNREEMIKYFRFEISKLKRLHELSLQEKTEELFKFKREKGS----L 370
Query: 172 PSRKERELEIIKSKLLQSISKLDEI---TLREDNPYCDNYDDAEVCGFEDRIGSLLHENE 228
+ + E E ++ K+ + IS++D+I T+ + N E RI SL + N+
Sbjct: 371 ALKYDPEFEPLRKKVPEIISRVDQIILNTINAPTAFSTNQVLEERGRLTGRIDSLYYANQ 430
Query: 229 QLQGLLADKKMVAKHLSLQVLDAERKMA-QHSLSELKLVKQVEKLSHELEDLKIESHIKD 287
L+GLLA+K K LS QV DA RKM+ Q SL E KL +Q+ K+ + EDL I+S I+D
Sbjct: 431 NLRGLLAEKMKDIKDLSRQVSDASRKMSFQLSLEE-KLSRQLHKIKGDYEDLHIQSTIRD 489
Query: 288 LLELSTLREVFDNYENHIDDA----NQEETFLRELLIEKEEQLSIMYEDRQKLKYENNQL 343
+ + + +FD+Y N + D ++ T L L EKE L + E+ Q+LK +
Sbjct: 490 EVYQTVTKRMFDDYRNSLQDPALTYQEKVTSLEAALSEKETALRLANEENQRLKEK---- 545
Query: 344 VAIAGSTLMQHHEQVNLVNDLTNFREKVCE-QELLILXXXXXXXXXXXXLYEALQQINVC 402
+ E+ + + + ++ E + + E +IL A+ + N
Sbjct: 546 --------LSKQEKEHGIQNNQDYPELIKQDNEEMILRDIEMEPHVSPRRSYAISEQNAE 597
Query: 403 KQEIHGLTDNLTAMSIALEEAKEQNASLDATIQEMKKTSAPSINSHKGQAGHLEYALVSM 462
+E+ L L S AL+E + + + Q LE+ LVS+
Sbjct: 598 YEELIKLKQTLEIASTALKEVESNELDYNGIL------------GKNEQEKQLEFILVSI 645
Query: 463 EKLSKSYSDFESRLAQSMKRNEIRLTNIICQFNPLVQQVAVLKKKEFWYKQILEIKCSNL 522
LSK + E++++ MK +E + Q +VQQ VL KK WYKQ+L+ + S L
Sbjct: 646 MDLSKEFVQIENKMSGDMKGSEKGPEILGYQCKHMVQQALVLTKKGLWYKQMLDTRRSQL 705
Query: 523 QKAEAE--------VDILGDEVDALLSILGKIYIALDHYSPVLKHYPGV 563
+KAEAE VD+LG++V LLS++ KIY+ L+HYSPV + YPG+
Sbjct: 706 RKAEAEESIKVSKMVDVLGNKVSTLLSLVQKIYVTLEHYSPVFQQYPGL 754
>Os09g0133800 Conserved hypothetical protein
Length = 661
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 165/571 (28%), Positives = 270/571 (47%), Gaps = 75/571 (13%)
Query: 56 IAALRDELSTIYSVVSASESGVFSSHGSHEKVEELNFLKMKDDNESSITERTTDSG---- 111
I LR +L T+ + SE G+ SH + NF +D+++ E+++ G
Sbjct: 110 IYNLRQQLVTLSKSLLNSEWGLSVSHYN-------NFEGAEDESKHRGNEKSSKDGITKE 162
Query: 112 -------ELMFDIPDFSLLKHMPSEEVTNFLKSEWLKLRRQHESELHEKTEELFRLKREF 164
E +F P ++LKHM +E+ +++RQH+S L EKTEE+FRLKRE
Sbjct: 163 NGSKGSNEDIFIDP--TVLKHMDRDELVAHFNKMMNQMKRQHDSTLQEKTEEIFRLKREN 220
Query: 165 AKDIALLPS--RKERELEIIKSKLLQSISKLDEITLREDNPYCDNYDDAEVCGFEDRIGS 222
K P R +E E+++ K+ + I+KLDE+ + +N G +D+I
Sbjct: 221 LKKEGPNPWHLRNNKEFELMRKKIWEVITKLDEVLV--ENKRTIRIKSDVFPGQQDKIKV 278
Query: 223 LLHENEQLQGLLADKKMVAKHLSLQVLDAERKMAQHSLSELKLVKQVEKLSHELEDLKIE 282
+ N QLQG D + + + + K + + E + Q+ +L ++ED I
Sbjct: 279 VDSHNHQLQGAPTDNE--EEECTTLI-----KASHFTPIETNYLNQIRRLESDIEDASIV 331
Query: 283 SHIKDLLE-------LSTLREVFDNYENHID-DANQEETFLRELLIEKEEQLSIMYEDRQ 334
+ +++ E +S ++ YE + + + +E + E ++
Sbjct: 332 TIVREETEKILVTEFISEIKMGLHGYEMEFNMNLDFWSIIQKEAIAEAASNINSFL---- 387
Query: 335 KLKYENNQLVAIAGSTLMQHHEQV-------NLV------------------------ND 363
LKY A A S MQ +++ NLV ++
Sbjct: 388 -LKYSEENSCAEAQSLHMQEMDKLKLNVDTFNLVIREKEEYLSQIEFKAIEDHLDFLRHE 446
Query: 364 LTNFREKVCEQELLILXXXXXXXXXXXXLYEALQQINVCKQEIHGLTDNLTAMSIALEEA 423
L + R KV +Q+ I L +ALQ ++ + + L D +S + +E
Sbjct: 447 LDSLRGKVAKQDSGISDKCRDFDVIVSRLEQALQHVHRNEIALKELNDRFRTVSDSQKEV 506
Query: 424 KEQNASLDATIQEMKKTSAPSINSHKGQAGHLEYALVSMEKLSKSYSDFESRLAQSMKRN 483
++QN L A I+E +K + SI+ K + + SM K +D ++ +A ++ N
Sbjct: 507 EKQNKVLHAIIKEKEKGFSSSISKEKEFTECMRCVVESMRGFEKLVTDQQTIIAHKVQHN 566
Query: 484 EIRLTNIICQFNPLVQQVAVLKKKEFWYKQILEIKCSNLQKAEAEVDILGDEVDALLSIL 543
E R + + Q L ++ L+KK YK+I E + SNLQKAE EVD+LGDEV+AL +L
Sbjct: 567 ESRFSLLKEQCKILAKEGNTLRKKALRYKEISETRASNLQKAELEVDLLGDEVEALTDLL 626
Query: 544 GKIYIALDHYSPVLKHYPGVTEILNLVQKAL 574
KIYIALDHYSPVL++Y GV EILN+++K L
Sbjct: 627 AKIYIALDHYSPVLQYYTGVMEILNMIKKHL 657
>Os03g0784500 Conserved hypothetical protein
Length = 273
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 14/159 (8%)
Query: 405 EIHGLTDNLTAMSIALEEAKEQNASLDATIQEMKKTSAPSINSHKGQAGHLEYALVSMEK 464
E+ L +L S AL+E + +N + I + Q LE L+S+ K
Sbjct: 104 ELVKLNSSLEIASAALKEVENKNIDYNG------------IFTKNEQEKQLECILISIMK 151
Query: 465 LSKSYSDFESRLAQSMKRNEIRLTNIICQFNPLVQQVAVLKKKEFWYKQILEIKCSNLQK 524
LSK + + E +L S++R+ R ++ N +V+Q VL K WYKQ+LE + S LQK
Sbjct: 152 LSKEFVEIEQKL--SVERSASRSEDLSDHCNHMVRQAVVLTKIGLWYKQMLETRRSELQK 209
Query: 525 AEAEVDILGDEVDALLSILGKIYIALDHYSPVLKHYPGV 563
AEA+V ILGD+V++ L++L KIY+ LD YSP L+ YPG+
Sbjct: 210 AEAKVVILGDKVNSHLNLLQKIYVTLDRYSPTLQQYPGL 248
>Os04g0521600 Conserved hypothetical protein
Length = 771
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 3/169 (1%)
Query: 409 LTDNLTAMSIALEEAKEQNASLDATIQE-MKKTSAPSINSHKGQAGH--LEYALVSMEKL 465
+ D +SI EEA +NA + + E + + NS + H L+ ALVS
Sbjct: 597 VGDTALNLSIPPEEANTENAEMTLILNEKLDVIHSTGSNSMLAEQDHFDLQMALVSFTGF 656
Query: 466 SKSYSDFESRLAQSMKRNEIRLTNIICQFNPLVQQVAVLKKKEFWYKQILEIKCSNLQKA 525
+ + +FE+ + ++ +RL + Q L++Q+ LK E Y+ +C +LQ A
Sbjct: 657 QEVFMNFEAVTCEKLETAMLRLNYLKKQQGNLIEQMRSLKMSEQSYQIAFIRRCHDLQTA 716
Query: 526 EAEVDILGDEVDALLSILGKIYIALDHYSPVLKHYPGVTEILNLVQKAL 574
EAEVD+LGDEV+ LL +L K Y ALD YSPVL+HY GV E+L L+ K L
Sbjct: 717 EAEVDLLGDEVELLLGLLRKTYKALDRYSPVLEHYLGVREMLKLLGKEL 765
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,135,209
Number of extensions: 617139
Number of successful extensions: 1961
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1950
Number of HSP's successfully gapped: 5
Length of query: 579
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 473
Effective length of database: 11,501,117
Effective search space: 5440028341
Effective search space used: 5440028341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)