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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0521600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0387) R2 : 0.00483
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.121 (0.0816) R2dN8 : 0.00624 R2N8 : 0.00483
σ : 0.73
deviance : 244.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
225.49 0.706 2.91 0.431 0.372 0.722 0.585 2.3 -0.115 5.42 4.54 442 -- --
230.5 0.707 2.93 0.345 0.473 0.851 -0.525 -- -0.167 5.04 -1.738 490 -- --
226.06 0.7 2.91 0.422 0.385 0.744 -- 1.94 -0.121 5.16 4.378 439 -- --
231.2 0.708 2.92 0.372 0.416 0.794 -- -- -0.146 5.01 0.8611 441 -- --
228.98 0.705 2.91 0.485 -- 0.458 -- 2.04 -0.0679 -- 13.49 417 -- --
236.2 0.72 2.91 0.393 0.165 -- 0.719 -- -0.0764 13.8 -- -- -- --
238.16 0.723 2.91 0.415 0.166 -- -- -- -0.0728 13.1 -- -- -- --
233.97 0.712 2.92 0.387 -- 0.439 -- -- -0.111 -- 11.52 417 -- --
234.75 0.714 2.93 -- 0.471 0.861 -- -- -0.193 4.87 -7.505 443 -- --
239.88 0.724 2.91 0.409 -- -- -- -- -0.076 -- -- -- -- --
242.71 0.729 2.92 -- 0.159 -- -- -- -0.119 12.9 -- -- -- --
237.92 0.718 2.93 -- -- 0.45 -- -- -0.157 -- 10 418 -- --
244.29 0.73 2.92 -- -- -- -- -- -0.121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 218.48 wind 1.0 10 < th dose dependent rect. 5 21
2 218.72 wind 7.0 4320 > th dose dependent rect. 24 2
3 218.77 precipitation 0.1 4320 < th dose independent rect. 22 1
4 218.77 precipitation 0.1 4320 < th dose dependent rect. 22 1
6 218.82 wind 7.0 4320 < th dose independent rect. 23 3
7 218.89 wind 7.0 4320 > th dose independent rect. 23 3
12 219.00 precipitation 0.1 4320 < th dose independent rect. 21 4
13 219.00 precipitation 0.1 4320 < th dose dependent rect. 21 4
14 219.01 precipitation 0.1 4320 > th dose independent rect. 22 1
15 219.01 precipitation 0.1 4320 > th dose dependent rect. 22 1
26 219.26 precipitation 0.1 4320 > th dose independent rect. 21 4
41 219.86 precipitation 0.1 4320 < th dose independent rect. 20 7
42 219.86 precipitation 0.1 4320 < th dose dependent rect. 20 7
49 220.05 precipitation 0.1 4320 > th dose independent rect. 20 7
94 222.18 wind 1.0 30 < th dose dependent rect. 5 1
102 222.72 precipitation 0.1 4320 > th dose dependent rect. 20 7
103 222.77 wind 1.0 30 < th dose dependent rect. 5 4
105 222.81 wind 1.0 10 < th dose independent rect. 5 21
118 223.22 radiation 40.0 720 > th dose independent rect. 8 1
138 223.30 humidity 50.0 1440 < th dose dependent rect. 11 2
159 223.40 atmosphere 1005.0 90 < th dose independent rect. 4 3
160 223.43 humidity 70.0 30 < th dose independent rect. 12 7
161 223.51 radiation 20.0 90 > th dose dependent rect. 12 22
162 223.53 radiation 20.0 30 > th dose independent rect. 12 23
188 223.73 radiation 20.0 30 > th dose dependent rect. 13 1
190 223.74 humidity 70.0 90 < th dose independent rect. 12 19
211 223.82 wind 7.0 4320 > th dose dependent rect. 21 1
253 224.15 humidity 70.0 90 < th dose independent rect. 12 2
301 224.39 wind 1.0 30 < th dose independent rect. 5 1
314 224.50 humidity 70.0 10 > th dose independent rect. 9 16
317 224.53 wind 1.0 30 < th dose dependent rect. 5 18
335 224.59 precipitation 0.1 90 > th dose independent rect. 16 3
338 224.63 humidity 70.0 270 < th dose independent rect. 10 8
343 224.65 precipitation 0.1 90 > th dose dependent rect. 13 7
346 224.67 precipitation 0.1 90 > th dose dependent rect. 16 3
362 224.76 radiation 40.0 30 > th dose independent sin 13 NA
376 224.82 temperature 30.0 10 < th dose independent rect. 19 18
381 224.84 wind 1.0 30 < th dose independent rect. 5 4
390 224.87 humidity 70.0 270 < th dose independent rect. 10 21
408 224.90 precipitation 0.1 10 > th dose independent rect. 17 1
438 224.90 precipitation 0.1 10 > th dose dependent rect. 17 1
519 225.03 temperature 30.0 10 < th dose independent rect. 11 2
541 225.09 atmosphere 1000.0 90 < th dose independent rect. 16 1
544 225.09 wind 1.0 30 < th dose independent rect. 4 9
558 225.12 humidity 70.0 10 < th dose independent rect. 12 23
580 225.22 wind 1.0 10 < th dose independent rect. 1 1
582 225.22 atmosphere 1005.0 270 < th dose independent rect. 1 17
606 225.27 atmosphere 1000.0 90 < th dose dependent rect. 16 1
608 225.28 radiation 40.0 30 < th dose independent sin 13 NA
609 225.28 wind 7.0 1440 < th dose independent rect. 21 1
690 225.46 humidity 70.0 10 > th dose independent rect. 9 8
707 225.54 radiation 20.0 10 > th dose independent rect. 13 1
712 225.55 atmosphere 1005.0 90 < th dose independent rect. 4 14
728 225.61 atmosphere 1005.0 90 > th dose independent rect. 4 8
733 225.63 wind 1.0 10 < th dose independent rect. 13 13
737 225.64 humidity 90.0 90 < th dose dependent rect. 12 7
743 225.66 temperature 30.0 10 < th dose independent rect. 4 9
745 225.67 wind 7.0 1440 > th dose independent rect. 21 1
809 225.80 radiation 30.0 30 > th dose dependent sin 13 NA
812 225.81 humidity 50.0 4320 < th dose dependent rect. 15 1
831 225.82 temperature 30.0 90 < th dose independent rect. 19 17
841 225.85 humidity 90.0 30 < th dose independent rect. 2 2
842 225.85 precipitation 0.1 720 > th dose independent rect. 20 2
843 225.85 precipitation 0.1 720 > th dose dependent rect. 20 2
845 225.86 wind 5.0 10 > th dose independent rect. 13 1
846 225.86 radiation 40.0 30 > th dose independent rect. 13 1
852 225.87 temperature 20.0 90 < th dose independent rect. 3 2
863 225.91 humidity 80.0 90 < th dose dependent rect. 2 3
908 225.93 wind 1.0 10 < th dose dependent rect. 1 1
918 225.95 humidity 80.0 90 < th dose dependent rect. 2 1
924 225.96 humidity 90.0 10 < th dose dependent rect. 3 1
930 225.98 radiation 20.0 720 < th dose independent rect. 9 1
952 226.02 humidity 70.0 270 > th dose independent rect. 10 12
987 226.06 humidity 70.0 10 > th dose independent rect. 19 22
993 226.09 wind 1.0 10 < th dose independent rect. 22 4