Os12g0612300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0612300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.89 | 0.345 | 12.1 | -0.867 | 1.23 | 0.5 | 0.483 | 0.329 | -0.115 | 2.94 | 24.7 | 10569 | -- | -- |
| 54 | 0.342 | 12.1 | -0.974 | 1.23 | 0.5 | 0.491 | -- | -0.15 | 2.93 | 24.62 | 10551 | -- | -- |
| 54.64 | 0.344 | 12.1 | -0.877 | 1.23 | 0.511 | -- | 0.389 | -0.132 | 2.88 | 24.8 | 11450 | -- | -- |
| 54.77 | 0.345 | 12.1 | -1 | 1.23 | 0.523 | -- | -- | -0.18 | 2.87 | 24.7 | 11460 | -- | -- |
| 138.12 | 0.547 | 12.1 | -0.756 | -- | 0.63 | -- | 0.696 | -0.085 | -- | 24.8 | 8320 | -- | -- |
| 62.49 | 0.371 | 12 | -0.698 | 1.25 | -- | 0.515 | -- | 0.0415 | 2.9 | -- | -- | -- | -- |
| 63.39 | 0.373 | 12 | -0.709 | 1.25 | -- | -- | -- | 0.0385 | 2.89 | -- | -- | -- | -- |
| 132.11 | 0.538 | 12 | -0.556 | -- | -0.459 | -- | -- | 0.207 | -- | 26 | 9815 | -- | -- |
| 72.8 | 0.397 | 12 | -- | 1.2 | 0.26 | -- | -- | 0.0714 | 3.04 | 28.7 | 5980 | -- | -- |
| 153.93 | 0.58 | 12 | -0.656 | -- | -- | -- | -- | 0.0707 | -- | -- | -- | -- | -- |
| 76.65 | 0.41 | 12 | -- | 1.24 | -- | -- | -- | 0.117 | 2.88 | -- | -- | -- | -- |
| 140.18 | 0.553 | 12 | -- | -- | -0.489 | -- | -- | 0.277 | -- | 26 | 9815 | -- | -- |
| 165.29 | 0.6 | 12 | -- | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.39 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 6 |
| 4 | 52.38 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 17 |
| 5 | 52.46 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 6 | 52.47 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 7 | 52.48 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 17 |
| 8 | 52.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 17 | 52.69 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 20 | 52.77 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 33 | 52.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 36 | 52.99 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 37 | 53.00 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 41 | 53.02 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 24 | 16 |
| 55 | 53.11 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 57 | 53.13 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 59 | 53.14 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 9 | 6 |
| 62 | 53.16 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 64 | 53.17 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 22 | 18 |
| 67 | 53.18 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 70 | 53.19 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 72 | 53.19 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 74 | 53.20 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 76 | 53.20 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 83 | 53.23 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 90 | 53.26 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 99 | 53.30 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 8 |
| 104 | 53.31 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 109 | 53.32 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 117 | 53.34 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 131 | 53.38 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 132 | 53.38 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 139 | 53.39 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 159 | 53.43 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 168 | 53.44 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 176 | 53.46 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 179 | 53.46 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 184 | 53.47 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 185 | 53.47 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 188 | 53.48 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 195 | 53.49 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 203 | 53.50 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 210 | 53.51 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 21 | 17 |
| 215 | 53.53 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 249 | 53.58 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 252 | 53.58 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 271 | 53.60 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 279 | 53.61 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 293 | 53.62 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 297 | 53.63 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 309 | 53.64 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 21 | NA |
| 319 | 53.64 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 10 | 17 |
| 328 | 53.66 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 335 | 53.66 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 18 |
| 336 | 53.66 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 365 | 53.68 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 9 | 6 |
| 382 | 53.70 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 392 | 53.70 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 402 | 53.71 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 404 | 53.71 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 410 | 53.72 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 459 | 53.75 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 460 | 53.75 | temperature | 20.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 480 | 53.76 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 482 | 53.76 | wind | 7.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 527 | 53.78 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 11 | 16 |
| 539 | 53.79 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 573 | 53.80 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 584 | 53.81 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 603 | 53.81 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 24 | 15 |
| 630 | 53.83 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 730 | 53.87 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 740 | 53.87 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 752 | 53.88 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 775 | 53.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 788 | 53.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 18 |
| 846 | 53.90 | wind | 1.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 898 | 53.91 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |
| 938 | 53.92 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 968 | 53.92 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 981 | 53.93 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 20 | NA |