Os03g0784500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0784500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.28 | 0.217 | 11.5 | 0.874 | 0.712 | 0.43 | 0.0708 | -0.0888 | 0.536 | 2.52 | 70.63 | 112 | -- | -- |
| 21.29 | 0.215 | 11.5 | 0.867 | 0.712 | 0.429 | 0.0169 | -- | 0.536 | 2.5 | 70.74 | 119 | -- | -- |
| 21.29 | 0.215 | 11.5 | 0.868 | 0.712 | 0.43 | -- | -0.0397 | 0.535 | 2.5 | 70.8 | 120 | -- | -- |
| 21.29 | 0.215 | 11.5 | 0.867 | 0.712 | 0.43 | -- | -- | 0.535 | 2.5 | 70.97 | 119 | -- | -- |
| 33.23 | 0.268 | 11.5 | 0.912 | -- | 0.966 | -- | -0.131 | 0.584 | -- | 69.2 | 87 | -- | -- |
| 25.49 | 0.237 | 11.5 | 0.881 | 1.05 | -- | 0.11 | -- | 0.497 | 2.76 | -- | -- | -- | -- |
| 25.53 | 0.237 | 11.5 | 0.878 | 1.05 | -- | -- | -- | 0.496 | 2.76 | -- | -- | -- | -- |
| 33.2 | 0.268 | 11.5 | 0.875 | -- | 0.977 | -- | -- | 0.59 | -- | 69.54 | 95 | -- | -- |
| 40.23 | 0.295 | 11.5 | -- | 0.807 | 0.464 | -- | -- | 0.453 | 2.12 | 81.08 | 271 | -- | -- |
| 89.43 | 0.442 | 11.5 | 0.923 | -- | -- | -- | -- | 0.523 | -- | -- | -- | -- | -- |
| 45.86 | 0.317 | 11.5 | -- | 1.07 | -- | -- | -- | 0.399 | 2.77 | -- | -- | -- | -- |
| 53.23 | 0.34 | 11.5 | -- | -- | 0.997 | -- | -- | 0.495 | -- | 70.49 | 108 | -- | -- |
| 111.91 | 0.494 | 11.5 | -- | -- | -- | -- | -- | 0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.00 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 19 |
| 2 | 20.06 | humidity | 70 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 4 | 20.09 | humidity | 80 | 270 | > th | dose independent | rect. | 2 | 17 |
| 17 | 20.43 | humidity | 70 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 27 | 20.52 | radiation | 1 | 270 | < th | dose independent | sin | 1 | NA |
| 30 | 20.55 | radiation | 1 | 270 | > th | dose independent | sin | 1 | NA |
| 33 | 20.57 | radiation | 1 | 270 | < th | dose dependent | sin | 1 | NA |
| 73 | 20.90 | humidity | 70 | 90 | > th | dose dependent | sin | 0 | NA |
| 80 | 20.94 | radiation | 1 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 112 | 21.02 | radiation | 1 | 270 | < th | dose independent | rect. | 2 | 18 |
| 115 | 21.02 | radiation | 1 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 153 | 21.16 | humidity | 80 | 90 | < th | dose independent | rect. | 22 | 20 |
| 199 | 21.27 | radiation | 1 | 270 | > th | dose independent | rect. | 6 | 11 |
| 233 | 21.32 | humidity | 70 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 234 | 21.34 | humidity | 80 | 90 | < th | dose independent | sin | 0 | NA |
| 243 | 21.35 | humidity | 80 | 90 | > th | dose independent | sin | 0 | NA |
| 252 | 21.36 | humidity | 70 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 255 | 21.37 | humidity | 70 | 90 | > th | dose dependent | no | NA | NA |
| 274 | 21.40 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 12 |
| 291 | 21.42 | humidity | 80 | 90 | < th | dose independent | rect. | 3 | 15 |
| 306 | 21.44 | radiation | 1 | 270 | < th | dose independent | rect. | 23 | 22 |
| 324 | 21.47 | radiation | 1 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 348 | 21.51 | radiation | 10 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 354 | 21.52 | humidity | 70 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 392 | 21.57 | humidity | 70 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 393 | 21.58 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 9 |
| 407 | 21.59 | radiation | 1 | 270 | < th | dose independent | rect. | 7 | 12 |
| 446 | 21.63 | humidity | 80 | 270 | > th | dose independent | rect. | 10 | 9 |
| 450 | 21.63 | humidity | 70 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 457 | 21.64 | humidity | 70 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 543 | 21.73 | humidity | 70 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 623 | 21.81 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 4 |
| 673 | 21.84 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 756 | 21.90 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 2 |
| 770 | 21.90 | humidity | 90 | 90 | < th | dose dependent | rect. | 21 | 20 |