BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0784500 Os03g0784500|AK108472
(273 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0784500 Conserved hypothetical protein 557 e-159
Os07g0147800 Conserved hypothetical protein 320 7e-88
Os12g0612300 Conserved hypothetical protein 100 2e-21
Os09g0133800 Conserved hypothetical protein 79 3e-15
>Os03g0784500 Conserved hypothetical protein
Length = 273
Score = 557 bits (1435), Expect = e-159, Method: Compositional matrix adjust.
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 1 TRKLLDDSMNSMHDAATNFSTELSSLEAMISEKEKALCLSNEENRMLKEKIAELEQCLIQ 60
TRKLLDDSMNSMHDAATNFSTELSSLEAMISEKEKALCLSNEENRMLKEKIAELEQCLIQ
Sbjct: 1 TRKLLDDSMNSMHDAATNFSTELSSLEAMISEKEKALCLSNEENRMLKEKIAELEQCLIQ 60
Query: 61 DKQEDPEVIKQESTEIILRDIEVAPHISPRRSHETPKQDMQYDELVKLNSSLEIASAALK 120
DKQEDPEVIKQESTEIILRDIEVAPHISPRRSHETPKQDMQYDELVKLNSSLEIASAALK
Sbjct: 61 DKQEDPEVIKQESTEIILRDIEVAPHISPRRSHETPKQDMQYDELVKLNSSLEIASAALK 120
Query: 121 EVENKNIDYNGIFTKNEQEKQLECILISIMKLSKEFVEIEQKLSVERSASRSEDLSDHCN 180
EVENKNIDYNGIFTKNEQEKQLECILISIMKLSKEFVEIEQKLSVERSASRSEDLSDHCN
Sbjct: 121 EVENKNIDYNGIFTKNEQEKQLECILISIMKLSKEFVEIEQKLSVERSASRSEDLSDHCN 180
Query: 181 HMVRQAVVLTKIGLWYKQMLETRRSELQKAEAKVVILGDKVNSHLNLLQKIYVTLDRYSP 240
HMVRQAVVLTKIGLWYKQMLETRRSELQKAEAKVVILGDKVNSHLNLLQKIYVTLDRYSP
Sbjct: 181 HMVRQAVVLTKIGLWYKQMLETRRSELQKAEAKVVILGDKVNSHLNLLQKIYVTLDRYSP 240
Query: 241 TLQQYPGLLDAFLKTCKLVAGLRSNQNKDDTTA 273
TLQQYPGLLDAFLKTCKLVAGLRSNQNKDDTTA
Sbjct: 241 TLQQYPGLLDAFLKTCKLVAGLRSNQNKDDTTA 273
>Os07g0147800 Conserved hypothetical protein
Length = 780
Score = 320 bits (820), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 166/280 (59%), Positives = 216/280 (77%), Gaps = 11/280 (3%)
Query: 1 TRKLLDDSMNSMHDAATNFSTELSSLEAMISEKEKALCLSNEENRMLKEKIAELE-QCLI 59
T+++ DD NS+ D A + +++SLEA +SEKE AL L+NEEN+ LKEK+++ E + I
Sbjct: 496 TKRMFDDYRNSLQDPALTYQEKVTSLEAALSEKETALRLANEENQRLKEKLSKQEKEHGI 555
Query: 60 QDKQEDPEVIKQESTEIILRDIEVAPHISPRRSHETPKQDMQYDELVKLNSSLEIASAAL 119
Q+ Q+ PE+IKQ++ E+ILRDIE+ PH+SPRRS+ +Q+ +Y+EL+KL +LEIAS AL
Sbjct: 556 QNNQDYPELIKQDNEEMILRDIEMEPHVSPRRSYAISEQNAEYEELIKLKQTLEIASTAL 615
Query: 120 KEVENKNIDYNGIFTKNEQEKQLECILISIMKLSKEFVEIEQKLSVERSASR--SEDLSD 177
KEVE+ +DYNGI KNEQEKQLE IL+SIM LSKEFV+IE K+S + S E L
Sbjct: 616 KEVESNELDYNGILGKNEQEKQLEFILVSIMDLSKEFVQIENKMSGDMKGSEKGPEILGY 675
Query: 178 HCNHMVRQAVVLTKIGLWYKQMLETRRSELQKAEAK--------VVILGDKVNSHLNLLQ 229
C HMV+QA+VLTK GLWYKQML+TRRS+L+KAEA+ V +LG+KV++ L+L+Q
Sbjct: 676 QCKHMVQQALVLTKKGLWYKQMLDTRRSQLRKAEAEESIKVSKMVDVLGNKVSTLLSLVQ 735
Query: 230 KIYVTLDRYSPTLQQYPGLLDAFLKTCKLVAGLRSNQNKD 269
KIYVTL+ YSP QQYPGLLDAFLKTCKLVAGLRS Q +D
Sbjct: 736 KIYVTLEHYSPVFQQYPGLLDAFLKTCKLVAGLRSKQKED 775
>Os12g0612300 Conserved hypothetical protein
Length = 579
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 14/159 (8%)
Query: 104 ELVKLNSSLEIASAALKEVENKNIDYNG------------IFTKNEQEKQLECILISIMK 151
E+ L +L S AL+E + +N + I + Q LE L+S+ K
Sbjct: 405 EIHGLTDNLTAMSIALEEAKEQNASLDATIQEMKKTSAPSINSHKGQAGHLEYALVSMEK 464
Query: 152 LSKEFVEIEQKL--SVERSASRSEDLSDHCNHMVRQAVVLTKIGLWYKQMLETRRSELQK 209
LSK + + E +L S++R+ R ++ N +V+Q VL K WYKQ+LE + S LQK
Sbjct: 465 LSKSYSDFESRLAQSMKRNEIRLTNIICQFNPLVQQVAVLKKKEFWYKQILEIKCSNLQK 524
Query: 210 AEAKVVILGDKVNSHLNLLQKIYVTLDRYSPTLQQYPGL 248
AEA+V ILGD+V++ L++L KIY+ LD YSP L+ YPG+
Sbjct: 525 AEAEVDILGDEVDALLSILGKIYIALDHYSPVLKHYPGV 563
>Os09g0133800 Conserved hypothetical protein
Length = 661
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 14/160 (8%)
Query: 105 LVKLNSSLEIASAALKEVENKNIDYNGIFTKNEQ--------EKQL-ECI--LISIMKLS 153
L +LN S + KEVE +N + I + E+ EK+ EC+ ++ M+
Sbjct: 489 LKELNDRFRTVSDSQKEVEKQNKVLHAIIKEKEKGFSSSISKEKEFTECMRCVVESMRGF 548
Query: 154 KEFVEIEQKL---SVERSASRSEDLSDHCNHMVRQAVVLTKIGLWYKQMLETRRSELQKA 210
++ V +Q + V+ + SR L + C + ++ L K L YK++ ETR S LQKA
Sbjct: 549 EKLVTDQQTIIAHKVQHNESRFSLLKEQCKILAKEGNTLRKKALRYKEISETRASNLQKA 608
Query: 211 EAKVVILGDKVNSHLNLLQKIYVTLDRYSPTLQQYPGLLD 250
E +V +LGD+V + +LL KIY+ LD YSP LQ Y G+++
Sbjct: 609 ELEVDLLGDEVEALTDLLAKIYIALDHYSPVLQYYTGVME 648
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,482,552
Number of extensions: 267084
Number of successful extensions: 995
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 990
Number of HSP's successfully gapped: 4
Length of query: 273
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 174
Effective length of database: 11,866,615
Effective search space: 2064791010
Effective search space used: 2064791010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)