BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0611000 Os12g0611000|AK111837
(172 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0611000 Similar to Zinc-finger protein Lsd1 278 2e-75
Os03g0639600 Similar to Zinc-finger protein Lsd1 202 8e-53
Os08g0159500 Similar to Zinc-finger protein Lsd1 152 1e-37
Os08g0130100 Zinc finger, LSD1-type domain containing protein 118 2e-27
Os01g0612700 Zinc finger, LSD1-type domain containing protein 86 1e-17
>Os12g0611000 Similar to Zinc-finger protein Lsd1
Length = 172
Score = 278 bits (710), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/154 (89%), Positives = 138/154 (89%)
Query: 1 MQSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNA 60
MQSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNA
Sbjct: 1 MQSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNA 60
Query: 61 TSVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMRHL 120
TSVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMRHL
Sbjct: 61 TSVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMRHL 120
Query: 121 PPNGXXXXXXXXXXXXXXXXNVTVVVENPMTVDA 154
PPNG NVTVVVENPMTVDA
Sbjct: 121 PPNGTSYTAPSTSAPTTQSQNVTVVVENPMTVDA 154
>Os03g0639600 Similar to Zinc-finger protein Lsd1
Length = 186
Score = 202 bits (515), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 106/169 (62%), Positives = 126/169 (74%), Gaps = 16/169 (9%)
Query: 1 MQSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAP-SPGMDIAHLICGGCRTLLMYTRN 59
MQSQIVCHGCR++L YP GAPSVCCA+C A+++ P +P M++AHLICGGCRTLLMYTRN
Sbjct: 1 MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRN 60
Query: 60 ATSVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTM-- 117
A +VRCSCC TVNLVRPV++IAH++CGQC+T LMYPYGAPSVKCAIC++ITNTGMNT+
Sbjct: 61 ADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVAP 120
Query: 118 ------------RHLPPNGXXX-XXXXXXXXXXXXXNVTVVVENPMTVD 153
+ PP+G NVTVVVENPMTVD
Sbjct: 121 TPSPMPTSSGSSYNAPPSGSSYNAPPPTSAPTSRPQNVTVVVENPMTVD 169
>Os08g0159500 Similar to Zinc-finger protein Lsd1
Length = 184
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 92/122 (75%), Gaps = 1/122 (0%)
Query: 2 QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61
QSQ+VC GCRN+L+YP GA SVCCAVC V++ P+PG ++A L+CGGC TLLMY R AT
Sbjct: 63 QSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAV-PAPGTEMAQLVCGGCHTLLMYIRGAT 121
Query: 62 SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMRHLP 121
SV+CSCC TVNL + +AH+NCG C+ +LMY YGA SVKCA+CNF+T+ G +
Sbjct: 122 SVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASPGTDQK 181
Query: 122 PN 123
P+
Sbjct: 182 PS 183
>Os08g0130100 Zinc finger, LSD1-type domain containing protein
Length = 147
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 87/153 (56%), Gaps = 24/153 (15%)
Query: 1 MQSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNA 60
MQ Q++C GCR ++ Y RG VCC C+ +++ PS D++ LIC GC TLL Y R A
Sbjct: 1 MQDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGA 60
Query: 61 TSVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMRHL 120
+++RC C+ +N R + IAHL CGQC+T LM+P GA +V+CA C ++ N +R
Sbjct: 61 SNIRCPSCNRLNSTRSANQIAHLTCGQCRTTLMHPPGASTVQCATCRYV-----NHVRDA 115
Query: 121 PPNGXXXXXXXXXXXXXXXXNVTVVVENPMTVD 153
P TV+VENP T+D
Sbjct: 116 RPQ-------------------TVLVENPKTLD 129
>Os01g0612700 Zinc finger, LSD1-type domain containing protein
Length = 855
Score = 85.9 bits (211), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 41 DIAHLICGGCRTLLMYTRNATSVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPS 100
++ ++CG CR LL Y R A V C+CC T+N V + ++CG C T+LMYP+GAP+
Sbjct: 759 EVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEVGKVHCGHCATLLMYPFGAPA 818
Query: 101 VKCAICNFITNTGMNTMR 118
VKC++C F+T G +R
Sbjct: 819 VKCSLCLFVTEIGERNVR 836
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.135 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,218,820
Number of extensions: 195904
Number of successful extensions: 624
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 596
Number of HSP's successfully gapped: 5
Length of query: 172
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 78
Effective length of database: 12,127,685
Effective search space: 945959430
Effective search space used: 945959430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)