Os03g0639600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Zinc-finger protein Lsd1.
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Os03g0639600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Zinc-finger protein Lsd1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.59 | 0.247 | 10.6 | 0.746 | 0.356 | 0.683 | 0.869 | -0.0939 | 0.324 | 20.2 | 60.54 | 7 | -- | -- |
| 27.5 | 0.244 | 10.6 | 0.744 | 0.356 | 0.68 | 0.895 | -- | 0.331 | 20 | 63.02 | 4 | -- | -- |
| 29.51 | 0.255 | 10.6 | 0.711 | 0.35 | 0.605 | -- | 0.135 | 0.332 | 20.7 | 64 | 4 | -- | -- |
| 29.56 | 0.253 | 10.6 | 0.715 | 0.353 | 0.611 | -- | -- | 0.33 | 20.6 | 64 | 3 | -- | -- |
| 36.31 | 0.282 | 10.6 | 0.71 | -- | 0.651 | -- | 0.106 | 0.332 | -- | 64 | 4 | -- | -- |
| 36.71 | 0.284 | 10.6 | 0.737 | 0.602 | -- | 0.452 | -- | 0.29 | 23.8 | -- | -- | -- | -- |
| 37.56 | 0.287 | 10.6 | 0.718 | 0.601 | -- | -- | -- | 0.287 | 0.00284 | -- | -- | -- | -- |
| 36.35 | 0.282 | 10.6 | 0.713 | -- | 0.654 | -- | -- | 0.332 | -- | 64 | 3 | -- | -- |
| 43.03 | 0.306 | 10.6 | -- | 0.354 | 0.622 | -- | -- | 0.258 | 20.6 | 63 | 2 | -- | -- |
| 60.27 | 0.363 | 10.6 | 0.737 | -- | -- | -- | -- | 0.295 | -- | -- | -- | -- | -- |
| 51.16 | 0.335 | 10.6 | -- | 0.61 | -- | -- | -- | 0.207 | 0.0698 | -- | -- | -- | -- |
| 49.71 | 0.328 | 10.6 | -- | -- | 0.677 | -- | -- | 0.248 | -- | 63 | 2 | -- | -- |
| 74.6 | 0.403 | 10.6 | -- | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 2 | 22.72 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 16 |
| 3 | 22.74 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 9 | 23.04 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 16 |
| 92 | 24.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 103 | 24.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 112 | 24.80 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 115 | 24.83 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 117 | 24.84 | radiation | 10 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 146 | 25.19 | humidity | 50 | 90 | > th | dose dependent | rect. | 13 | 20 |
| 175 | 25.41 | humidity | 80 | 30 | > th | dose independent | rect. | 5 | 15 |
| 177 | 25.42 | radiation | 10 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 192 | 25.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 196 | 25.61 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 201 | 25.63 | humidity | 50 | 10 | > th | dose dependent | rect. | 13 | 20 |
| 205 | 25.64 | humidity | 50 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 222 | 25.79 | humidity | 70 | 30 | > th | dose dependent | sin | 0 | NA |
| 253 | 25.96 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 277 | 26.10 | radiation | 10 | 90 | > th | dose independent | sin | 1 | NA |
| 292 | 26.14 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 7 |
| 302 | 26.17 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 21 |
| 313 | 26.23 | humidity | 80 | 10 | < th | dose independent | sin | 0 | NA |
| 332 | 26.28 | radiation | 1 | 270 | < th | dose independent | sin | 2 | NA |
| 349 | 26.33 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 20 |
| 365 | 26.39 | radiation | 10 | 270 | < th | dose dependent | sin | 3 | NA |
| 433 | 26.59 | humidity | 80 | 90 | < th | dose independent | rect. | 7 | 8 |
| 442 | 26.61 | radiation | 10 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 473 | 26.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 511 | 26.82 | humidity | 70 | 90 | > th | dose dependent | rect. | 23 | 21 |
| 512 | 26.83 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 8 |
| 532 | 26.86 | temperature | 25 | 30 | > th | dose independent | rect. | 9 | 19 |
| 540 | 26.88 | humidity | 70 | 10 | > th | dose independent | rect. | 12 | 21 |
| 547 | 26.90 | humidity | 80 | 30 | > th | dose independent | sin | 1 | NA |
| 581 | 26.96 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 10 |
| 604 | 26.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 610 | 26.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 616 | 27.01 | radiation | 20 | 90 | < th | dose independent | rect. | 13 | 20 |
| 622 | 27.02 | radiation | 10 | 270 | > th | dose independent | sin | 4 | NA |
| 681 | 27.12 | humidity | 90 | 10 | < th | dose dependent | sin | 1 | NA |
| 716 | 27.17 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 17 |
| 721 | 27.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 722 | 27.17 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 777 | 27.26 | humidity | 70 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 780 | 27.27 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 20 |
| 786 | 27.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 818 | 27.32 | radiation | 10 | 10 | > th | dose independent | sin | 0 | NA |
| 845 | 27.33 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 17 |
| 892 | 27.39 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 920 | 27.43 | humidity | 60 | 10 | > th | dose dependent | rect. | 23 | 23 |