BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0639600 Os03g0639600|AK111569
         (186 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20380.8  | chr4:11005027-11006438 FORWARD LENGTH=211          163   6e-41
AT1G32540.1  | chr1:11768253-11769591 FORWARD LENGTH=188          150   4e-37
AT4G21610.1  | chr4:11489069-11490300 FORWARD LENGTH=156           84   3e-17

>AT4G20380.8 | chr4:11005027-11006438 FORWARD LENGTH=211
          Length = 210

 Score =  163 bits (412), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 103/221 (46%), Positives = 123/221 (55%), Gaps = 47/221 (21%)

Query: 1   MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRN 60
           MQ Q+VCHGCR++L YP GA +V CALC  I  VPPP P  +MAH+ICGGCRT+LMYTR 
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 61  ADTVRCSCCSTVNLV-----------------------------------RPVNNIAHVS 85
           A +VRCSCC T NLV                                    P + +A ++
Sbjct: 61  ASSVRCSCCQTTNLVPESSFTLLFDNILKVLKTKLLDGPGGLAHSNQVAHAPSSQVAQIN 120

Query: 86  CGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVAXXXXXXXXXXXXXYNAPPSGSSYNXX 145
           CG CRTTLMYPYGA SVKCA+C ++TN  M+                    P+G++    
Sbjct: 121 CGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNR----------PNGTA--CP 168

Query: 146 XXXXXXXXRPQNVTVVVENPMTVDEKGKLVSNVVVGVTTGK 186
                     Q  TVVVENPM+VDE GKLVSNVVVGVTT K
Sbjct: 169 PSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVVGVTTDK 209



>AT1G32540.1 | chr1:11768253-11769591 FORWARD LENGTH=188
          Length = 187

 Score =  150 bits (379), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 87/116 (75%), Gaps = 2/116 (1%)

Query: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61
           QSQ+VC GCR++L YP GA SVCCA+C A+T VPPP    EMA L+CGGC TLLMY R A
Sbjct: 65  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 122

Query: 62  DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNT 117
            +V+CSCC TVNL    N +AHV+CG C   LMY YGA SVKCA+C+++T+ G +T
Sbjct: 123 TSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGST 178



>AT4G21610.1 | chr4:11489069-11490300 FORWARD LENGTH=156
          Length = 155

 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 53/87 (60%)

Query: 30  AITTVPPPAPVMEMAHLICGGCRTLLMYTRNADTVRCSCCSTVNLVRPVNNIAHVSCGQC 89
           A+   P    + E A ++CG CR LL Y R +  V+CS C TVNLV   N +  V+C  C
Sbjct: 45  AVNPNPTTVEIPEKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEANQVGQVNCNNC 104

Query: 90  RTTLMYPYGAPSVKCAICHYITNTGMN 116
           +  LMYPYGAP+V+C+ C+ +T+   N
Sbjct: 105 KLLLMYPYGAPAVRCSSCNSVTDISEN 131




 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61
           ++Q+VC  CR +L Y  G+  V C+ CQ +  V       ++  + C  C+ LLMY   A
Sbjct: 58  KAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLV---LEANQVGQVNCNNCKLLLMYPYGA 114

Query: 62  DTVRCSCCSTV 72
             VRCS C++V
Sbjct: 115 PAVRCSSCNSV 125



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.133    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,736,965
Number of extensions: 132739
Number of successful extensions: 395
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 7
Length of query: 186
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 93
Effective length of database: 8,556,881
Effective search space: 795789933
Effective search space used: 795789933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)