BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0639600 Os03g0639600|AK111569
(186 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0639600 Similar to Zinc-finger protein Lsd1 321 2e-88
Os12g0611000 Similar to Zinc-finger protein Lsd1 239 1e-63
Os08g0159500 Similar to Zinc-finger protein Lsd1 147 3e-36
Os08g0130100 Zinc finger, LSD1-type domain containing protein 144 5e-35
Os01g0612700 Zinc finger, LSD1-type domain containing protein 87 6e-18
>Os03g0639600 Similar to Zinc-finger protein Lsd1
Length = 186
Score = 321 bits (822), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 163/186 (87%), Positives = 163/186 (87%)
Query: 1 MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRN 60
MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRN
Sbjct: 1 MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRN 60
Query: 61 ADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVAX 120
ADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVA
Sbjct: 61 ADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVAP 120
Query: 121 XXXXXXXXXXXXYNAPPSGSSYNXXXXXXXXXXRPQNVTVVVENPMTVDEKGKLVSNVVV 180
YNAPPSGSSYN RPQNVTVVVENPMTVDEKGKLVSNVVV
Sbjct: 121 TPSPMPTSSGSSYNAPPSGSSYNAPPPTSAPTSRPQNVTVVVENPMTVDEKGKLVSNVVV 180
Query: 181 GVTTGK 186
GVTTGK
Sbjct: 181 GVTTGK 186
>Os12g0611000 Similar to Zinc-finger protein Lsd1
Length = 172
Score = 239 bits (609), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/185 (67%), Positives = 146/185 (78%), Gaps = 16/185 (8%)
Query: 1 MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRN 60
MQSQIVCHGCR++L YP GAPSVCCA+C A+++ P +P M++AHLICGGCRTLLMYTRN
Sbjct: 1 MQSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAP-SPGMDIAHLICGGCRTLLMYTRN 59
Query: 61 ADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVAX 120
A +VRCSCC TVNLVRPV++IAH++CGQC+T LMYPYGAPSVKCAIC++ITNTGMNT+
Sbjct: 60 ATSVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTM-- 117
Query: 121 XXXXXXXXXXXXYNAPPSGSSYNXXXXXXXXXXRPQNVTVVVENPMTVDEKGKLVSNVVV 180
+ PP+G+SY + QNVTVVVENPMTVD KGKLVSNVVV
Sbjct: 118 ------------RHLPPNGTSYT-APSTSAPTTQSQNVTVVVENPMTVDAKGKLVSNVVV 164
Query: 181 GVTTG 185
GVTTG
Sbjct: 165 GVTTG 169
>Os08g0159500 Similar to Zinc-finger protein Lsd1
Length = 184
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 86/113 (76%), Gaps = 2/113 (1%)
Query: 2 QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61
QSQ+VC GCR++L YP+GA SVCCA+C +T VP AP EMA L+CGGC TLLMY R A
Sbjct: 63 QSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVP--APGTEMAQLVCGGCHTLLMYIRGA 120
Query: 62 DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTG 114
+V+CSCC TVNL N +AHV+CG CR LMY YGA SVKCA+C+++T+ G
Sbjct: 121 TSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG 173
>Os08g0130100 Zinc finger, LSD1-type domain containing protein
Length = 147
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 103/186 (55%), Gaps = 40/186 (21%)
Query: 1 MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRN 60
MQ Q++C GCR V++Y G VCC C +T V P A V +M+ LIC GC TLL Y R
Sbjct: 1 MQDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSA-VADMSELICSGCPTLLFYNRG 59
Query: 61 ADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVAX 120
A +RC C+ +N R N IAH++CGQCRTTLM+P GA +V+CA C Y+ +
Sbjct: 60 ASNIRCPSCNRLNSTRSANQIAHLTCGQCRTTLMHPPGASTVQCATCRYVNHV------- 112
Query: 121 XXXXXXXXXXXXYNAPPSGSSYNXXXXXXXXXXRPQNVTVVVENPMTVDEKGKLVSNVVV 180
RPQ TV+VENP T+D+KGKLVSNVVV
Sbjct: 113 ------------------------------RDARPQ--TVLVENPKTLDDKGKLVSNVVV 140
Query: 181 GVTTGK 186
GVT+ K
Sbjct: 141 GVTSWK 146
>Os01g0612700 Zinc finger, LSD1-type domain containing protein
Length = 855
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 42 EMAHLICGGCRTLLMYTRNADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPS 101
E+ ++CG CR LL Y R A V C+CC T+N V + + V CG C T LMYP+GAP+
Sbjct: 759 EVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEVGKVHCGHCATLLMYPFGAPA 818
Query: 102 VKCAICHYITNTGMNTV 118
VKC++C ++T G V
Sbjct: 819 VKCSLCLFVTEIGERNV 835
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.133 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,229,977
Number of extensions: 232809
Number of successful extensions: 725
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 7
Length of query: 186
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 91
Effective length of database: 12,075,471
Effective search space: 1098867861
Effective search space used: 1098867861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)