Os12g0611000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Zinc-finger protein Lsd1.
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Os12g0611000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Zinc-finger protein Lsd1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.35 | 0.439 | 6.71 | -0.246 | 0.751 | -1.02 | -1.13 | 1.24 | -0.256 | 6.91 | 21.33 | 1771 | -- | -- |
| 90.84 | 0.444 | 6.7 | 0.0677 | 0.695 | -1.15 | -0.916 | -- | -0.232 | 7.06 | 21.4 | 1530 | -- | -- |
| 90.56 | 0.443 | 6.71 | -0.246 | 0.733 | -1.03 | -- | 1.2 | -0.245 | 6.94 | 21.24 | 1721 | -- | -- |
| 93.46 | 0.45 | 6.67 | 0.0776 | 0.704 | -1.12 | -- | -- | -0.173 | 6.95 | 21.4 | 1530 | -- | -- |
| 117.83 | 0.506 | 6.72 | -0.201 | -- | -1.06 | -- | 1.13 | -0.229 | -- | 21.3 | 1510 | -- | -- |
| 125.4 | 0.525 | 6.6 | 0.566 | 0.734 | -- | -1.15 | -- | 0.131 | 6.83 | -- | -- | -- | -- |
| 128.81 | 0.531 | 6.6 | 0.547 | 0.73 | -- | -- | -- | 0.134 | 6.91 | -- | -- | -- | -- |
| 120.55 | 0.511 | 6.69 | 0.0763 | -- | -1.16 | -- | -- | -0.167 | -- | 21.29 | 1491 | -- | -- |
| 93.57 | 0.451 | 6.67 | -- | 0.728 | -1.15 | -- | -- | -0.187 | 7.01 | 21.38 | 1530 | -- | -- |
| 156.74 | 0.585 | 6.61 | 0.562 | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
| 136.68 | 0.547 | 6.61 | -- | 0.736 | -- | -- | -- | 0.0732 | 6.86 | -- | -- | -- | -- |
| 120.68 | 0.512 | 6.69 | -- | -- | -1.19 | -- | -- | -0.181 | -- | 21.27 | 1491 | -- | -- |
| 165.08 | 0.6 | 6.63 | -- | -- | -- | -- | -- | 0.0854 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 8 | 85.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 16 | 85.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 57 | 86.45 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 64 | 86.50 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 8 |
| 243 | 87.46 | temperature | 15 | 1440 | > th | dose dependent | sin | 12 | NA |
| 262 | 87.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 350 | 87.84 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 386 | 87.96 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 5 |
| 421 | 88.06 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 452 | 88.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 477 | 88.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 13 |
| 540 | 88.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 563 | 88.44 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 643 | 88.63 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 667 | 88.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 686 | 88.73 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 822 | 89.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 7 |
| 836 | 89.06 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 932 | 89.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 935 | 89.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |