BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0611000 Os12g0611000|AK111837
         (172 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32540.1  | chr1:11768253-11769591 FORWARD LENGTH=188          154   3e-38
AT4G20380.8  | chr4:11005027-11006438 FORWARD LENGTH=211          145   1e-35
AT4G21610.1  | chr4:11489069-11490300 FORWARD LENGTH=156           86   1e-17

>AT1G32540.1 | chr1:11768253-11769591 FORWARD LENGTH=188
          Length = 187

 Score =  154 bits (388), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/115 (63%), Positives = 91/115 (79%), Gaps = 1/115 (0%)

Query: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61
           QSQ+VC GCRN+L+YP GA SVCCAVC+AV++  P PG ++A L+CGGC TLLMY R AT
Sbjct: 65  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPP-PGTEMAQLVCGGCHTLLMYIRGAT 123

Query: 62  SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNT 116
           SV+CSCC TVNL    + +AH+NCG C  +LMY YGA SVKCA+CNF+T+ G +T
Sbjct: 124 SVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGST 178



>AT4G20380.8 | chr4:11005027-11006438 FORWARD LENGTH=211
          Length = 210

 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 109/194 (56%), Gaps = 41/194 (21%)

Query: 1   MQSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGM-DIAHLICGGCRTLLMYTRN 59
           MQ Q+VCHGCRN+L+YPRGA +V CA+C+ ++   P P   D+AH+ICGGCRT+LMYTR 
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 60  ATSVRCSCCDTVNLV-----------------------------------RPVSSIAHLN 84
           A+SVRCSCC T NLV                                    P S +A +N
Sbjct: 61  ASSVRCSCCQTTNLVPESSFTLLFDNILKVLKTKLLDGPGGLAHSNQVAHAPSSQVAQIN 120

Query: 85  CGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMR-HLP---PNGXXXXXXXXXXXXXXXX 140
           CG C+T LMYPYGA SVKCA+C F+TN  M+  R  LP   PNG                
Sbjct: 121 CGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTSTSTPPSQT 180

Query: 141 NVTVVVENPMTVDA 154
             TVVVENPM+VD 
Sbjct: 181 -QTVVVENPMSVDE 193



>AT4G21610.1 | chr4:11489069-11490300 FORWARD LENGTH=156
          Length = 155

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 51/78 (65%)

Query: 41  DIAHLICGGCRTLLMYTRNATSVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPS 100
           + A ++CG CR LL Y R +  V+CS C TVNLV   + +  +NC  C+ +LMYPYGAP+
Sbjct: 57  EKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPA 116

Query: 101 VKCAICNFITNTGMNTMR 118
           V+C+ CN +T+   N  R
Sbjct: 117 VRCSSCNSVTDISENNKR 134



 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61
           ++Q+VC  CR +L Y RG+  V C+ C  V+    +    +  + C  C+ LLMY   A 
Sbjct: 58  KAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEA--NQVGQVNCNNCKLLLMYPYGAP 115

Query: 62  SVRCSCCDTV 71
           +VRCS C++V
Sbjct: 116 AVRCSSCNSV 125



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.135    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,138,212
Number of extensions: 115346
Number of successful extensions: 395
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 6
Length of query: 172
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 80
Effective length of database: 8,584,297
Effective search space: 686743760
Effective search space used: 686743760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 108 (46.2 bits)