Os08g0130100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, LSD1-type domain containing protein.
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Os08g0130100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, LSD1-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 382.36 | 0.919 | 7.76 | -4.49 | 0.388 | 2.18 | 2.65 | 2.36 | -0.581 | 15.3 | 20.93 | 931 | -- | -- |
| 396.42 | 0.927 | 7.82 | -4.98 | 0.381 | 1.96 | 2.44 | -- | -0.731 | 15.6 | 21 | 987 | -- | -- |
| 403.62 | 0.936 | 7.76 | -4.51 | 0.395 | 2.22 | -- | 2.09 | -0.596 | 14.4 | 20.9 | 919 | -- | -- |
| 412.9 | 0.946 | 7.82 | -5.02 | 0.421 | 2.06 | -- | -- | -0.707 | 14.9 | 20.9 | 984 | -- | -- |
| 409.97 | 0.943 | 7.75 | -4.43 | -- | 2.06 | -- | 2.1 | -0.56 | -- | 21 | 742 | -- | -- |
| 513.51 | 1.06 | 7.72 | -4.2 | 0.292 | -- | 3.07 | -- | -0.201 | 16.6 | -- | -- | -- | -- |
| 537.92 | 1.09 | 7.71 | -4.19 | 0.335 | -- | -- | -- | -0.185 | 17.8 | -- | -- | -- | -- |
| 422.93 | 0.958 | 7.82 | -4.98 | -- | 1.97 | -- | -- | -0.69 | -- | 20.96 | 931 | -- | -- |
| 981.95 | 1.46 | 7.63 | -- | 0.547 | 0.635 | -- | -- | 0.136 | 16.6 | 22.4 | 1050 | -- | -- |
| 543.75 | 1.09 | 7.71 | -4.2 | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
| 999.84 | 1.48 | 7.61 | -- | 0.404 | -- | -- | -- | 0.281 | 17.3 | -- | -- | -- | -- |
| 988.18 | 1.46 | 7.64 | -- | -- | 0.631 | -- | -- | 0.0919 | -- | 22.1 | 660 | -- | -- |
| 1008.37 | 1.48 | 7.6 | -- | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 383.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 2 | 383.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 4 | 385.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 10 | 387.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 26 | 390.02 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 19 |
| 55 | 392.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 5 |
| 73 | 393.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 82 | 394.06 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 114 | 395.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 149 | 396.43 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 22 |
| 182 | 397.51 | temperature | 20 | 720 | < th | dose independent | sin | 11 | NA |
| 282 | 399.86 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 23 |
| 286 | 400.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 301 | 400.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 332 | 400.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 337 | 400.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 357 | 401.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 360 | 401.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 457 | 401.99 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 484 | 402.20 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 660 | 403.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 679 | 403.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 684 | 403.73 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 742 | 404.15 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 22 |
| 777 | 404.37 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 808 | 404.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 815 | 404.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 874 | 404.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 876 | 404.92 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 892 | 405.02 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 898 | 405.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 983 | 405.51 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |