BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0130100 Os08g0130100|AK120454
         (147 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20380.8  | chr4:11005027-11006438 FORWARD LENGTH=211          121   1e-28
AT1G32540.1  | chr1:11768253-11769591 FORWARD LENGTH=188          110   3e-25
AT4G21610.1  | chr4:11489069-11490300 FORWARD LENGTH=156           64   4e-11

>AT4G20380.8 | chr4:11005027-11006438 FORWARD LENGTH=211
          Length = 210

 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/210 (38%), Positives = 106/210 (50%), Gaps = 63/210 (30%)

Query: 1   MQDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVA-DMSELICSGCPTLLFYNRG 59
           MQDQL+C GCR ++ Y RG + V C  CNT+  V P     DM+ +IC GC T+L Y RG
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 60  ASNIRCPSCNRLN---------------------------STRSANQIAH--------LT 84
           AS++RC  C   N                               +NQ+AH        + 
Sbjct: 61  ASSVRCSCCQTTNLVPESSFTLLFDNILKVLKTKLLDGPGGLAHSNQVAHAPSSQVAQIN 120

Query: 85  CGQCRTTLMHPPGASTVQCATCRYVNHVRDA---------RPQ----------------- 118
           CG CRTTLM+P GAS+V+CA C++V +V  +         RP                  
Sbjct: 121 CGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTSTSTPPSQT 180

Query: 119 -TVLVENPKTLDDKGKLVSNVVVGVTSWKR 147
            TV+VENP ++D+ GKLVSNVVVGVT+ K+
Sbjct: 181 QTVVVENPMSVDESGKLVSNVVVGVTTDKK 210



>AT1G32540.1 | chr1:11768253-11769591 FORWARD LENGTH=188
          Length = 187

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 1/118 (0%)

Query: 2   QDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGAS 61
           Q QL+CSGCR ++ Y  G   VCC  CN +TAV P    +M++L+C GC TLL Y RGA+
Sbjct: 65  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPG-TEMAQLVCGGCHTLLMYIRGAT 123

Query: 62  NIRCPSCNRLNSTRSANQIAHLTCGQCRTTLMHPPGASTVQCATCRYVNHVRDARPQT 119
           +++C  C+ +N    ANQ+AH+ CG C   LM+  GA +V+CA C +V  V  +   T
Sbjct: 124 SVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGSTSTT 181



>AT4G21610.1 | chr4:11489069-11490300 FORWARD LENGTH=156
          Length = 155

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 5/99 (5%)

Query: 21  AGVCCPGCNTLTA-VNPS----AVADMSELICSGCPTLLFYNRGASNIRCPSCNRLNSTR 75
           + V  P   T+TA VNP+     + + ++++C  C  LL Y RG+ +++C SC  +N   
Sbjct: 32  SAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVL 91

Query: 76  SANQIAHLTCGQCRTTLMHPPGASTVQCATCRYVNHVRD 114
            ANQ+  + C  C+  LM+P GA  V+C++C  V  + +
Sbjct: 92  EANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISE 130




 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 2   QDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGAS 61
           + Q++C  CRR++ Y RG   V C  C T+  V       + ++ C+ C  LL Y  GA 
Sbjct: 58  KAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLV--LEANQVGQVNCNNCKLLLMYPYGAP 115

Query: 62  NIRCPSCNRLNSTRSANQ 79
            +RC SCN +      N+
Sbjct: 116 AVRCSSCNSVTDISENNK 133



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.133    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,238,069
Number of extensions: 114855
Number of successful extensions: 523
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 509
Number of HSP's successfully gapped: 8
Length of query: 147
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 58
Effective length of database: 8,666,545
Effective search space: 502659610
Effective search space used: 502659610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 107 (45.8 bits)