BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0130100 Os08g0130100|AK120454
(147 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0130100 Zinc finger, LSD1-type domain containing protein 300 2e-82
Os03g0639600 Similar to Zinc-finger protein Lsd1 145 1e-35
Os12g0611000 Similar to Zinc-finger protein Lsd1 142 9e-35
Os08g0159500 Similar to Zinc-finger protein Lsd1 111 1e-25
Os01g0612700 Zinc finger, LSD1-type domain containing protein 64 3e-11
>Os08g0130100 Zinc finger, LSD1-type domain containing protein
Length = 147
Score = 300 bits (768), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MQDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGA 60
MQDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGA
Sbjct: 1 MQDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGA 60
Query: 61 SNIRCPSCNRLNSTRSANQIAHLTCGQCRTTLMHPPGASTVQCATCRYVNHVRDARPQTV 120
SNIRCPSCNRLNSTRSANQIAHLTCGQCRTTLMHPPGASTVQCATCRYVNHVRDARPQTV
Sbjct: 61 SNIRCPSCNRLNSTRSANQIAHLTCGQCRTTLMHPPGASTVQCATCRYVNHVRDARPQTV 120
Query: 121 LVENPKTLDDKGKLVSNVVVGVTSWKR 147
LVENPKTLDDKGKLVSNVVVGVTSWKR
Sbjct: 121 LVENPKTLDDKGKLVSNVVVGVTSWKR 147
>Os03g0639600 Similar to Zinc-finger protein Lsd1
Length = 186
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 104/186 (55%), Gaps = 40/186 (21%)
Query: 1 MQDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSA-VADMSELICSGCPTLLFYNRG 59
MQ Q++C GCR V++Y G VCC C +T V P A V +M+ LIC GC TLL Y R
Sbjct: 1 MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRN 60
Query: 60 ASNIRCPSCNRLNSTRSANQIAHLTCGQCRTTLMHPPGASTVQCATCRYVNH-------- 111
A +RC C+ +N R N IAH++CGQCRTTLM+P GA +V+CA C Y+ +
Sbjct: 61 ADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVAP 120
Query: 112 -----------------------------VRDARPQ--TVLVENPKTLDDKGKLVSNVVV 140
+RPQ TV+VENP T+D+KGKLVSNVVV
Sbjct: 121 TPSPMPTSSGSSYNAPPSGSSYNAPPPTSAPTSRPQNVTVVVENPMTVDEKGKLVSNVVV 180
Query: 141 GVTSWK 146
GVT+ K
Sbjct: 181 GVTTGK 186
>Os12g0611000 Similar to Zinc-finger protein Lsd1
Length = 172
Score = 142 bits (358), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 102/171 (59%), Gaps = 24/171 (14%)
Query: 1 MQDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGA 60
MQ Q++C GCR ++ Y RG VCC C+ +++ PS D++ LIC GC TLL Y R A
Sbjct: 1 MQSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNA 60
Query: 61 SNIRCPSCNRLNSTRSANQIAHLTCGQCRTTLMHPPGASTVQCATCRYV-----NHVRDA 115
+++RC C+ +N R + IAHL CGQC+T LM+P GA +V+CA C ++ N +R
Sbjct: 61 TSVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMRHL 120
Query: 116 RPQ-------------------TVLVENPKTLDDKGKLVSNVVVGVTSWKR 147
P TV+VENP T+D KGKLVSNVVVGVT+ +
Sbjct: 121 PPNGTSYTAPSTSAPTTQSQNVTVVVENPMTVDAKGKLVSNVVVGVTTGGK 171
>Os08g0159500 Similar to Zinc-finger protein Lsd1
Length = 184
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 78/118 (66%), Gaps = 2/118 (1%)
Query: 2 QDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGAS 61
Q QL+CSGCR ++ Y G VCC C+T+TAV P+ +M++L+C GC TLL Y RGA+
Sbjct: 63 QSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAV-PAPGTEMAQLVCGGCHTLLMYIRGAT 121
Query: 62 NIRCPSCNRLNSTRSANQIAHLTCGQCRTTLMHPPGASTVQCATCRYVNHVRDARPQT 119
+++C C+ +N ANQ+AH+ CG CR LM+ GA +V+CA C +V V A P T
Sbjct: 122 SVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSV-GASPGT 178
>Os01g0612700 Zinc finger, LSD1-type domain containing protein
Length = 855
Score = 64.3 bits (155), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 41 DMSELICSGCPTLLFYNRGASNIRCPSCNRLNSTRSANQIAHLTCGQCRTTLMHPPGAST 100
++ +++C C LL Y RGA + C C +N A+++ + CG C T LM+P GA
Sbjct: 759 EVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEVGKVHCGHCATLLMYPFGAPA 818
Query: 101 VQCATCRYVNHV--RDARPQTVLVENPKTLDDKG 132
V+C+ C +V + R+ R + + +E P + G
Sbjct: 819 VKCSLCLFVTEIGERNVR-RRLSIEQPTRTNSSG 851
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.133 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,374,022
Number of extensions: 198231
Number of successful extensions: 762
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 7
Length of query: 147
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 56
Effective length of database: 12,284,327
Effective search space: 687922312
Effective search space used: 687922312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 151 (62.8 bits)