Os01g0612700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, LSD1-type domain containing protein.
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Os01g0612700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, LSD1-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.51 | 0.466 | 7.14 | 1.8 | 0.808 | -1.83 | 0.32 | -0.805 | 0.399 | 19.4 | 30.07 | 90 | -- | -- |
| 99.28 | 0.464 | 7.16 | 1.7 | 0.801 | -1.85 | 0.236 | -- | 0.385 | 19.3 | 30.95 | 95 | -- | -- |
| 98.77 | 0.463 | 7.14 | 1.79 | 0.808 | -1.83 | -- | -0.808 | 0.404 | 19.4 | 30.19 | 91 | -- | -- |
| 99.48 | 0.465 | 7.15 | 1.67 | 0.8 | -1.87 | -- | -- | 0.383 | 19.3 | 31.01 | 95 | -- | -- |
| 123.57 | 0.518 | 7.12 | 1.72 | -- | -2.46 | -- | -0.995 | 0.398 | -- | 39.99 | 236 | -- | -- |
| 142.41 | 0.559 | 7.08 | 2.11 | 1.19 | -- | 0.395 | -- | 0.714 | 17.5 | -- | -- | -- | -- |
| 142.8 | 0.56 | 7.08 | 2.11 | 1.19 | -- | -- | -- | 0.716 | 17.5 | -- | -- | -- | -- |
| 124.21 | 0.519 | 7.14 | 1.57 | -- | -2.49 | -- | -- | 0.355 | -- | 55.24 | 236 | -- | -- |
| 165.05 | 0.598 | 7.24 | -- | 0.711 | -2.54 | -- | -- | 0.0817 | 20.7 | 30.06 | 100 | -- | -- |
| 216.19 | 0.687 | 7.06 | 2.07 | -- | -- | -- | -- | 0.687 | -- | -- | -- | -- | -- |
| 260.11 | 0.754 | 7.13 | -- | 1.15 | -- | -- | -- | 0.481 | 17.6 | -- | -- | -- | -- |
| 184.52 | 0.633 | 7.19 | -- | -- | -3.02 | -- | -- | 0.122 | -- | 41.23 | 239 | -- | -- |
| 329.29 | 0.847 | 7.11 | -- | -- | -- | -- | -- | 0.458 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.76 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 43 | 95.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 57 | 96.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 60 | 96.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 69 | 96.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 72 | 96.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 73 | 96.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 93 | 97.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 95 | 98.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 15 |
| 98 | 98.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 103 | 98.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 105 | 98.51 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 118 | 99.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 124 | 99.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 135 | 99.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 168 | 100.08 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 216 | 101.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 239 | 101.55 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 271 | 102.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 299 | 102.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 335 | 103.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 345 | 103.37 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 468 | 105.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 553 | 106.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 566 | 106.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 588 | 106.66 | temperature | 30 | 30 | < th | dose dependent | sin | 23 | NA |
| 619 | 106.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 632 | 107.00 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 675 | 107.41 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 711 | 107.71 | temperature | 10 | 90 | > th | dose dependent | sin | 5 | NA |
| 715 | 107.75 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 723 | 107.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 771 | 108.16 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 22 |
| 882 | 109.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 887 | 109.04 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 943 | 109.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |