Os08g0159500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Zinc-finger protein Lsd1.
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Os08g0159500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Zinc-finger protein Lsd1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.81 | 0.628 | 12.8 | -2.06 | 1.74 | -2.81 | 0.0605 | -6.16 | -0.976 | 11.2 | 0.83 | 1414 | -- | -- |
| 191.42 | 0.644 | 12.9 | -2.64 | 1.8 | -1.54 | -0.269 | -- | -1.06 | 11.1 | 3.291 | 1397 | -- | -- |
| 178.83 | 0.623 | 12.8 | -2.06 | 1.74 | -2.8 | -- | -6.13 | -0.976 | 11.2 | 0.83 | 1414 | -- | -- |
| 189.33 | 0.641 | 12.9 | -2.55 | 1.77 | -1.49 | -- | -- | -1.07 | 11.2 | 3.805 | 1394 | -- | -- |
| 256.45 | 0.746 | 12.9 | -2.39 | -- | -3.1 | -- | -4.57 | -1.05 | -- | 1.946 | 1610 | -- | -- |
| 223.19 | 0.7 | 12.9 | -2.31 | 1.54 | -- | -0.546 | -- | -0.87 | 11.1 | -- | -- | -- | -- |
| 224.45 | 0.702 | 12.9 | -2.33 | 1.54 | -- | -- | -- | -0.872 | 11.1 | -- | -- | -- | -- |
| 251.58 | 0.739 | 12.9 | -2.7 | -- | -2.74 | -- | -- | -1.09 | -- | 2.81 | 1634 | -- | -- |
| 310.97 | 0.821 | 12.9 | -- | 1.61 | -1.38 | -- | -- | -1.07 | 10.9 | 9.998 | 9999 | -- | -- |
| 371.92 | 0.901 | 12.9 | -2.37 | -- | -- | -- | -- | -0.885 | -- | -- | -- | -- | -- |
| 367.48 | 0.897 | 12.8 | -- | 1.56 | -- | -- | -- | -0.613 | 11.2 | -- | -- | -- | -- |
| 399.51 | 0.934 | 12.9 | -- | -- | -1.12 | -- | -- | -0.629 | -- | 9.998 | 9999 | -- | -- |
| 519.57 | 1.06 | 12.9 | -- | -- | -- | -- | -- | -0.622 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 11 | 167.21 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 14 | 167.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 15 | 167.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 41 | 169.96 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 12 |
| 68 | 171.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 75 | 171.45 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 85 | 171.71 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 87 | 171.82 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 92 | 171.98 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 93 | 171.98 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 95 | 172.04 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 114 | 172.26 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 118 | 172.28 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 176 | 172.87 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 188 | 172.98 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 189 | 173.00 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 194 | 173.04 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 20 | NA |
| 209 | 173.10 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 15 |
| 246 | 173.38 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 259 | 173.53 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 262 | 173.56 | temperature | 25.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 266 | 173.57 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 277 | 173.68 | temperature | 25.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 317 | 173.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 337 | 173.98 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 348 | 174.04 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 358 | 174.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 17 |
| 364 | 174.13 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 454 | 174.41 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 469 | 174.48 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 492 | 174.52 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 500 | 174.54 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 508 | 174.56 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 539 | 174.62 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 550 | 174.63 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 595 | 174.72 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 614 | 174.75 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 616 | 174.75 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 639 | 174.77 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 652 | 174.78 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 653 | 174.78 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 673 | 174.80 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 756 | 174.92 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 770 | 174.93 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 812 | 175.00 | temperature | 30.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 823 | 175.01 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 828 | 175.01 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 841 | 175.02 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 845 | 175.02 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 869 | 175.02 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 9 | 22 |
| 907 | 175.04 | temperature | 30.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 916 | 175.04 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 941 | 175.06 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 6 | 13 |
| 966 | 175.07 | temperature | 30.0 | 43200 | > th | dose independent | sin | 22 | NA |
| 970 | 175.07 | temperature | 30.0 | 43200 | < th | dose independent | no | NA | NA |