BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0159500 Os08g0159500|AK111759
(184 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0159500 Similar to Zinc-finger protein Lsd1 291 2e-79
Os12g0611000 Similar to Zinc-finger protein Lsd1 127 4e-30
Os03g0639600 Similar to Zinc-finger protein Lsd1 122 1e-28
Os01g0612700 Zinc finger, LSD1-type domain containing protein 93 1e-19
Os08g0130100 Zinc finger, LSD1-type domain containing protein 89 2e-18
>Os08g0159500 Similar to Zinc-finger protein Lsd1
Length = 184
Score = 291 bits (745), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/184 (80%), Positives = 149/184 (80%)
Query: 1 MHLSAGFLSCRERKGDFSCLTAARICEASTSDAVVQAAGTAMXXXXXXXXXXXXXXXXXN 60
MHLSAGFLSCRERKGDFSCLTAARICEASTSDAVVQAAGTAM N
Sbjct: 1 MHLSAGFLSCRERKGDFSCLTAARICEASTSDAVVQAAGTAMPVPLAPYPTPPVPFTPPN 60
Query: 61 GAQSQLVCSGCRNLLMYPAGXXXXXXXXXXXXXXXXXXGTEMAQLVCGGCHTLLMYIRGA 120
GAQSQLVCSGCRNLLMYPAG GTEMAQLVCGGCHTLLMYIRGA
Sbjct: 61 GAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTLLMYIRGA 120
Query: 121 TSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASPGTDQ 180
TSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASPGTDQ
Sbjct: 121 TSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASPGTDQ 180
Query: 181 KPSS 184
KPSS
Sbjct: 181 KPSS 184
>Os12g0611000 Similar to Zinc-finger protein Lsd1
Length = 172
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Query: 63 QSQLVCSGCRNLLMYPAGXXXXXXXX-XXXXXXXXXXGTEMAQLVCGGCHTLLMYIRGAT 121
QSQ+VC GCRN+L+YP G G ++A L+CGGC TLLMY R AT
Sbjct: 2 QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61
Query: 122 SVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG 173
SV+CSCC TVNL + +AH+NCG C+ +LMY YGA SVKCA+CNF+T+ G
Sbjct: 62 SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTG 113
>Os03g0639600 Similar to Zinc-finger protein Lsd1
Length = 186
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
Query: 63 QSQLVCSGCRNLLMYPAGXXXX--XXXXXXXXXXXXXXGTEMAQLVCGGCHTLLMYIRGA 120
QSQ+VC GCR++L YP+G EMA L+CGGC TLLMY R A
Sbjct: 2 QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61
Query: 121 TSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG---ASPG 177
+V+CSCC TVNL N +AHV+CG CR LMY YGA SVKCA+C+++T+ G +P
Sbjct: 62 DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVAPT 121
Query: 178 TDQKPSS 184
P+S
Sbjct: 122 PSPMPTS 128
>Os01g0612700 Zinc finger, LSD1-type domain containing protein
Length = 855
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 53/73 (72%)
Query: 101 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARS 160
E+ Q+VCG C LL Y RGA V C+CC T+N +EA++V V+CG+C LLMY +GA +
Sbjct: 759 EVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEVGKVHCGHCATLLMYPFGAPA 818
Query: 161 VKCAVCNFVTSVG 173
VKC++C FVT +G
Sbjct: 819 VKCSLCLFVTEIG 831
>Os08g0130100 Zinc finger, LSD1-type domain containing protein
Length = 147
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 63 QSQLVCSGCRNLLMYPAGXXXXXXXXXXXXXXXXXXGT-EMAQLVCGGCHTLLMYIRGAT 121
Q QL+CSGCR ++ Y G +M++L+C GC TLL Y RGA+
Sbjct: 2 QDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGAS 61
Query: 122 SVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSV-GASPGT 178
+++C C+ +N ANQ+AH+ CG CR LM+ GA +V+CA C +V V A P T
Sbjct: 62 NIRCPSCNRLNSTRSANQIAHLTCGQCRTTLMHPPGASTVQCATCRYVNHVRDARPQT 119
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.130 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,664,997
Number of extensions: 120590
Number of successful extensions: 392
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 5
Length of query: 184
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 89
Effective length of database: 12,075,471
Effective search space: 1074716919
Effective search space used: 1074716919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)