BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0159500 Os08g0159500|AK111759
(184 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32540.1 | chr1:11768253-11769591 FORWARD LENGTH=188 183 3e-47
AT4G20380.8 | chr4:11005027-11006438 FORWARD LENGTH=211 112 1e-25
AT4G21610.1 | chr4:11489069-11490300 FORWARD LENGTH=156 100 5e-22
>AT1G32540.1 | chr1:11768253-11769591 FORWARD LENGTH=188
Length = 187
Score = 183 bits (465), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 94/120 (78%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 63 QSQLVCSGCRNLLMYPAGXXXXXXXXXXXXXXXXXXGTEMAQLVCGGCHTLLMYIRGATS 122
QSQLVCSGCRNLLMYP G GTEMAQLVCGGCHTLLMYIRGATS
Sbjct: 65 QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 124
Query: 123 VQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASPG-TDQK 181
VQCSCCHTVNLA+EANQVAHVNCGNC MLLMYQYGARSVKCAVCNFVTSVG S TD K
Sbjct: 125 VQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGSTSTTDSK 184
>AT4G20380.8 | chr4:11005027-11006438 FORWARD LENGTH=211
Length = 210
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 80/159 (50%), Gaps = 37/159 (23%)
Query: 63 QSQLVCSGCRNLLMYPAGXXXX--XXXXXXXXXXXXXXGTEMAQLVCGGCHTLLMYIRGA 120
Q QLVC GCRNLLMYP G +MA ++CGGC T+LMY RGA
Sbjct: 2 QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61
Query: 121 TSVQCSCCHTVNLAME---------------------------ANQVAH--------VNC 145
+SV+CSCC T NL E +NQVAH +NC
Sbjct: 62 SSVRCSCCQTTNLVPESSFTLLFDNILKVLKTKLLDGPGGLAHSNQVAHAPSSQVAQINC 121
Query: 146 GNCRMLLMYQYGARSVKCAVCNFVTSVGASPGTDQKPSS 184
G+CR LMY YGA SVKCAVC FVT+V S G P++
Sbjct: 122 GHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTN 160
>AT4G21610.1 | chr4:11489069-11490300 FORWARD LENGTH=156
Length = 155
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 60/86 (69%), Gaps = 4/86 (4%)
Query: 100 TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGAR 159
E AQ+VCG C LL Y+RG+ V+CS C TVNL +EANQV VNC NC++LLMY YGA
Sbjct: 56 PEKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAP 115
Query: 160 SVKCAVCNFVTSVGAS----PGTDQK 181
+V+C+ CN VT + + P ++Q+
Sbjct: 116 AVRCSSCNSVTDISENNKRPPWSEQQ 141
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.130 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,883,338
Number of extensions: 74357
Number of successful extensions: 345
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 3
Length of query: 184
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 92
Effective length of database: 8,584,297
Effective search space: 789755324
Effective search space used: 789755324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)