BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0589400 Os12g0589400|AK119349
(477 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0589400 Conserved hypothetical protein 928 0.0
Os12g0587200 Protein of unknown function DUF1618 domain con... 281 8e-76
Os12g0589200 276 2e-74
Os12g0590400 Conserved hypothetical protein 217 2e-56
Os12g0565000 Conserved hypothetical protein 181 7e-46
Os10g0521200 162 4e-40
Os03g0615300 Protein of unknown function DUF1618 domain con... 69 7e-12
>Os12g0589400 Conserved hypothetical protein
Length = 477
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/477 (93%), Positives = 447/477 (93%)
Query: 1 MEAHGWMVLDRIVRCWSXXXXXXXXXXXPTSSEVAYTCSGHPIRVSLRVADPPAVSRLYV 60
MEAHGWMVLDRIVRCWS PTSSEVAYTCSGHPIRVSLRVADPPAVSRLYV
Sbjct: 1 MEAHGWMVLDRIVRCWSDDDDVVGGDDDPTSSEVAYTCSGHPIRVSLRVADPPAVSRLYV 60
Query: 61 HRPGWPRVYDLGDAEAIAAHRGSILLSARVPFADLGTVAPGQFPVDYYVYTAGEGLRRPS 120
HRPGWPRVYDLGDAEAIAAHRGSILLSARVPFADLGTVAPGQFPVDYYVYTAGEGLRRPS
Sbjct: 61 HRPGWPRVYDLGDAEAIAAHRGSILLSARVPFADLGTVAPGQFPVDYYVYTAGEGLRRPS 120
Query: 121 LTRLPPCFIGGFSSPEVDRHFKPHRCQQQRVMVEQNVGFFCHGAGNFTVADINIHKGKAV 180
LTRLPPCFIGGFSSPEVDRHFKPHRCQQQRVMVEQNVGFFCHGAGNFTVADINIHKGKAV
Sbjct: 121 LTRLPPCFIGGFSSPEVDRHFKPHRCQQQRVMVEQNVGFFCHGAGNFTVADINIHKGKAV 180
Query: 181 ELCVLNHYADCPQQPQWKVQILEMQQQPNQNHHLRGWWTDAVLPLHDSYLACVDCYHGII 240
ELCVLNHYADCPQQPQWKVQILEMQQQPNQNHHLRGWWTDAVLPLHDSYLACVDCYHGII
Sbjct: 181 ELCVLNHYADCPQQPQWKVQILEMQQQPNQNHHLRGWWTDAVLPLHDSYLACVDCYHGII 240
Query: 241 LIDVKTQRYFNYIPLPAEAKHGRRRVDKYSPDPARSASINSAGNITVVCIXXXXXXXXXX 300
LIDVKTQRYFNYIPLPAEAKHGRRRVDKYSPDPARSASINSAGNITVVCI
Sbjct: 241 LIDVKTQRYFNYIPLPAEAKHGRRRVDKYSPDPARSASINSAGNITVVCIADDNAAAGGR 300
Query: 301 XXXXXXXXXFIEIESWCLVDIHESRWILDFTMEAGKFWDICSAANQPLLPHAPPTFPLVS 360
FIEIESWCLVDIHESRWILDFTMEAGKFWDICSAANQPLLPHAPPTFPLVS
Sbjct: 301 NNNSTAGSAFIEIESWCLVDIHESRWILDFTMEAGKFWDICSAANQPLLPHAPPTFPLVS 360
Query: 361 MANPFAISFLLYDKANNFLLEDKGNGLYWMIEVDMRNQILLSPATLYISEEEEELFINGK 420
MANPFAISFLLYDKANNFLLEDKGNGLYWMIEVDMRNQILLSPATLYISEEEEELFINGK
Sbjct: 361 MANPFAISFLLYDKANNFLLEDKGNGLYWMIEVDMRNQILLSPATLYISEEEEELFINGK 420
Query: 421 EEEQERCCDERYPPMKYFYGHNFIPSWFPSYLKKGGDTTRFAMFSFLFVIQKHLPFV 477
EEEQERCCDERYPPMKYFYGHNFIPSWFPSYLKKGGDTTRFAMFSFLFVIQKHLPFV
Sbjct: 421 EEEQERCCDERYPPMKYFYGHNFIPSWFPSYLKKGGDTTRFAMFSFLFVIQKHLPFV 477
>Os12g0587200 Protein of unknown function DUF1618 domain containing protein
Length = 507
Score = 281 bits (719), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 192/494 (38%), Positives = 259/494 (52%), Gaps = 48/494 (9%)
Query: 3 AHGWMVLDRIVRCWSXXXXXXXXXXXPTSSEVAYTCSGHPIRVSLRVADPPAVSRLYVH- 61
A W+VLD VRC S T+S+V TC+G P+R SLRVADPPAVSRLY+H
Sbjct: 13 AADWIVLDPYVRC-SWRRRHKYEEEDITASKVGRTCTGFPVRASLRVADPPAVSRLYLHC 71
Query: 62 RPGWPRVYDLGDA---EAIAAHRGSILLSARVPFADLGTVAPGQFPVDYYVYTAGEGLRR 118
P WP DL + + IAAHRG IL A VPF + G G +P+DY++Y+A +
Sbjct: 72 PPQWPA--DLPEVRYPDVIAAHRGCILFVAAVPFEEPGFNVDGHYPLDYFIYSASPS-SQ 128
Query: 119 PSLTRLPPCFIGGFSSPEVDRHFKPHRCQQQRVMVEQNVGFFCHGAGN--------FTVA 170
P LTRLPPCF+GGF+ E D ++P+ Q+QR M ++VG C FTVA
Sbjct: 129 PLLTRLPPCFVGGFTDQEEDELYQPYHQQRQRYMCSRDVGLLCRDGDGDGEDGRSLFTVA 188
Query: 171 DINIHKGKAVELCVLNHYADCPQQPQWKVQILEMQQQPNQ-NHHLRGWWTDAVLPLHDSY 229
+ K VELCV+ + +W + L +++ + +L W TDAVLPLHD +
Sbjct: 189 HLTSSGSKEVELCVVQS----GEAEEWSITPLRVRRAMSMLGLNLGEWRTDAVLPLHDRF 244
Query: 230 LACVDCYHGIILIDV----KTQRYFNYIPLPAEAKHGRRRV--DKYSPDPARSASINSAG 283
L VD Y GI+LIDV F++IPLP + G R+ Y DP R + +
Sbjct: 245 LCWVDYYQGILLIDVLNPGDEPHQFSFIPLPKPVRDGSTRLFSQSYCADPVRCVCVRGSS 304
Query: 284 N----ITVVCIXXXXXXXXXXXXXXXXXXXFIEIESWCLVDIHESRWILDFTMEAGKFWD 339
+ I +VC+ I +W LV I + W LDFTMEA +FWD
Sbjct: 305 DSGFFIKLVCVTIAATADKDVYPPA------FTITAWTLVSIDQKTWELDFTMEAAEFWD 358
Query: 340 IC--SAANQPLLPHAPPTFPLVSMANPFAISFLLYDKANNFLLEDKGNGLYWMIEVDMRN 397
+C S + LP A PTF +S+ +P +SFLL +K ++ L+W++E+DM N
Sbjct: 359 LCANSVGHTCALPRAVPTFSHLSLVDPGVVSFLLMEKIDD-------EFLFWIVELDMTN 411
Query: 398 QILLSPATLYISEEEEELFINGKEEEQERCCDERYPPMK-YFYGHNFIPSWFPSYLKKGG 456
++L S TLYI EEEE + ++ QE R K F+G F PS F SYL+K
Sbjct: 412 KVLRSLPTLYIQVEEEEEDDDEIKKVQEVQGPSRCKAYKRVFHGEYFFPSHFTSYLRK-N 470
Query: 457 DTTRFAMFSFLFVI 470
RF M F VI
Sbjct: 471 PIQRFDMCPFCLVI 484
>Os12g0589200
Length = 468
Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/300 (51%), Positives = 193/300 (64%), Gaps = 16/300 (5%)
Query: 4 HGWMVLDRIVRCWSXXXXXXXXXXXPTSSEVAYTCSGHPIRVSLRVADPPAVSRLYVHRP 63
H W++LDR C T+SE A+TCSG IR SLRVADPPAVSRL++HR
Sbjct: 21 HSWIILDRCAHCSDGDVVGDDDDDDVTASESAHTCSGRRIRASLRVADPPAVSRLHLHRL 80
Query: 64 G--WPRVYDLGDAEAIAAHRGSILLSARVPFADLGTVAPGQFPVDYYVYTAGEGLRR--P 119
WP YDL AE +AAH G+IL VPF+D G VAPG FPVDY+VYTAG G P
Sbjct: 81 DGPWPDAYDLHHAEVLAAHNGAILFRTGVPFSDPGFVAPGHFPVDYFVYTAGGGAAASPP 140
Query: 120 SLTRLPPCFIGGFSSPEVDRHFKPHRCQQQRVMVEQNVGFFCHG-AGNFTVADINIHKGK 178
SLTRLPPCFIGGFS P D ++KP+R Q+QR+M+ +N+GF AG FTVADI + G
Sbjct: 141 SLTRLPPCFIGGFSDPAEDEYYKPYRVQRQRIMLGENIGFLSGDVAGEFTVADIRNYDGN 200
Query: 179 AVELCVLNHYADCP-----QQP-QWKVQILEMQQQPNQNHHLRGWWTDAVLPLHDSYLAC 232
++ELC+ NH+A P Q P QW++Q + + + L W D VLPLH YL C
Sbjct: 201 SLELCIFNHHATLPSPSPEQSPEQWRIQRVP---KIGDDDELPKWVNDLVLPLHGHYLCC 257
Query: 233 VDCYHGIILIDVKTQRYFNYIPLPAEAKHGRRRV--DKYSPDPARSASINSAGNITVVCI 290
VD Y+GI+LID + F+YIPLP EA +G RRV D+ PDPAR S+ AG +T+VC+
Sbjct: 258 VDFYNGILLIDADNLQQFSYIPLPEEAMNGSRRVDDDEDDPDPARRVSVTGAGLVTLVCV 317
>Os12g0590400 Conserved hypothetical protein
Length = 160
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/135 (82%), Positives = 117/135 (86%), Gaps = 7/135 (5%)
Query: 4 HGWMVLDRIVRCWSXXXXXXXXXXXPTSSEVAYTCSGHPIRVSLRVADPPAVSRLYVHRP 63
HG+MVLDRIVRCWS PT+SE+AYTCSGHPIRVSLRVADPPAVSRLYVHRP
Sbjct: 15 HGYMVLDRIVRCWSGVGGDDD----PTASEIAYTCSGHPIRVSLRVADPPAVSRLYVHRP 70
Query: 64 GWPRVYDLGDAEAIAAHRGSILLSARVPFADLGTVAPGQFPVDYYVYTA--GEGLRRPSL 121
GW RVYDLGDAE IAAHRGSILLSARVPFADL T+APGQFP+DY+VYTA GEGL RPSL
Sbjct: 71 GWSRVYDLGDAEVIAAHRGSILLSARVPFADLDTIAPGQFPLDYFVYTARPGEGL-RPSL 129
Query: 122 TRLPPCFIGGFSSPE 136
TRLPPCFIGGFSSP
Sbjct: 130 TRLPPCFIGGFSSPR 144
>Os12g0565000 Conserved hypothetical protein
Length = 277
Score = 181 bits (460), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 129/212 (60%), Gaps = 8/212 (3%)
Query: 4 HGWMVLDRIVRCWSXXXXXXXXXXXPTSSEVAYTCSGHPIRVSLRVADPPAVSRLYVHRP 63
HGW++LDR V T+SE+A TCSG +R SLRVADPPAVSRL +HR
Sbjct: 8 HGWIILDRFVHSSDGDVDAADVV---TASEIALTCSGRRVRASLRVADPPAVSRLRIHRL 64
Query: 64 G--WPRVYDLGDAEAIAAHRGSILLSARVPFADLGTVAPGQFPVDYYVYT-AGEGLRRPS 120
WP Y L A+ +AAHRGSIL ARVPFAD V PG FPVDY+VYT G S
Sbjct: 65 DQPWPDAYILRHAQVVAAHRGSILFWARVPFADDEFVVPGYFPVDYFVYTAGASGAASSS 124
Query: 121 LTRLPPCFIGGFSSPEVDRHFKPHRCQQQRVMVEQNVGFFCHGA-GNFTVADINIHKGKA 179
LTRLPPCFIGG + + D +FKP+R Q QR+M+++NVGF + G FTVADI I +
Sbjct: 125 LTRLPPCFIGGAAPDDEDHYFKPYRKQHQRIMLDENVGFLSGDSDGEFTVADITIVDCTS 184
Query: 180 VELC-VLNHYADCPQQPQWKVQILEMQQQPNQ 210
+ NH+ P QW++ LEMQ Q
Sbjct: 185 LTYASSTNHHERSPSPVQWRMHRLEMQADAPQ 216
>Os10g0521200
Length = 195
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 113/179 (63%), Gaps = 15/179 (8%)
Query: 43 IRVSLRVADPPAVSRLYVHRP-------GWPRVYDLGDAEAIAAHRGSILLSARVPFADL 95
IR+SLRVADPPA RL P WP YDL AE +AAH GSIL RVPFAD
Sbjct: 6 IRISLRVADPPAAGRLPPLHPPPRRRRPTWPNAYDLRHAEVVAAHHGSILFRTRVPFADP 65
Query: 96 GTVAPGQFPVDYYVYTA-GEGLRRPSLTRLPPCFIGGFSSPEVDRHFKPHRCQQQRVMVE 154
VAPG FPVDY+VYT PSLTRLPPCFI GFS P D ++KP++ Q++++M++
Sbjct: 66 DFVAPGHFPVDYFVYTTDAAAASPPSLTRLPPCFIDGFSDPVEDEYYKPYQLQRRQIMLD 125
Query: 155 QNVGFFCHGAGN---FTVADINIHKGKAVELCVLNHYADCPQQP----QWKVQILEMQQ 206
+N+GF + + + F VADI + ++ELC+ NH+A+ P QW++Q LEM
Sbjct: 126 ENIGFLSYSSNDGDEFVVADIRNYHCDSLELCIFNHHANSPSSSLSPEQWRIQHLEMHH 184
>Os03g0615300 Protein of unknown function DUF1618 domain containing protein
Length = 332
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 108/247 (43%), Gaps = 28/247 (11%)
Query: 42 PIRVSLRVADPPAVSRLYVHRPGWPRVYDLGDAEAIAAHRGSILLSARVPFADLGTVAPG 101
P ++ R+ADPPA+SRLYV P P ++ +A HR +L V F +
Sbjct: 57 PFTIAFRIADPPAISRLYVQWPQGPNPEEMVACHLVATHRNLVL----VCFCYIVECPVP 112
Query: 102 QFPVDYYVYTAG--EGLRRPSLTRLPPCFI---GGFSSP---EVDRHFKPHRCQQQ---R 150
P DY+++TA + + P L LPPC GG P + + F P + R
Sbjct: 113 ACPQDYFIFTASGDDPVSSPLLKALPPCTYQPKGGEPLPCTYQPEGGFPPSDVEGDGNLR 172
Query: 151 VMVE-QNVGFFCHGAGNFTVADI----NIHKGKAVELCVL-----NHYADCPQQPQWKVQ 200
+E ++VG C G F VA++ NI+ LCVL + D +W +
Sbjct: 173 YPLEFRSVGILCQGE-EFAVAELQVLRNINANVKARLCVLRSAISSKGEDGDGGGRWDIM 231
Query: 201 ILEMQQQPNQNHHLRGWWTDAVLPLHDSYLACVDCYHGIILIDVKTQR-YFNYIPLPAEA 259
L + + + +WT + +YL VD G++ DV +R +I P ++
Sbjct: 232 ELPIVYGSGEEYWDIFYWTTDTVIAFQNYLCWVDYDRGMLFCDVLQKRPGIAFIRFPLDS 291
Query: 260 -KHGRRR 265
+GR R
Sbjct: 292 FPNGRSR 298
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.140 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,628,537
Number of extensions: 767368
Number of successful extensions: 2341
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 2321
Number of HSP's successfully gapped: 8
Length of query: 477
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 372
Effective length of database: 11,553,331
Effective search space: 4297839132
Effective search space used: 4297839132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)