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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0565000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0339) R2 : 0.0181
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.207 (0.0714) R2dN8 : 0.0234 R2N8 : 0.0181
σ : 0.638
deviance : 187.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.39 0.606 3.18 0.507 0.395 -9.48 0.85 37.4 0.233 22.1 0.0006035 77 -- --
170.08 0.612 3.25 0.317 0.417 0.997 0.889 -- 0.244 21.9 0.0006035 77 -- --
163.76 0.601 3.16 0.546 0.39 -31.4 -- 110 0.245 21.9 0.0006035 77 -- --
172.23 0.611 3.26 0.276 0.4 1.06 -- -- 0.244 21.6 -0.02525 22 -- --
172.85 0.616 3.14 0.564 -- -33.2 -- 117 0.245 -- 0.0006035 77 -- --
171.12 0.613 3.25 0.331 0.418 -- 0.902 -- 0.242 22 -- -- -- --
174.27 0.618 3.25 0.297 0.417 -- -- -- 0.241 21.8 -- -- -- --
181.66 0.628 3.24 0.261 -- 1.21 -- -- 0.247 -- -2.5e-05 22 -- --
173.97 0.614 3.26 -- 0.4 1.14 -- -- 0.219 21.8 -0.03304 22 -- --
184.63 0.635 3.24 0.301 -- -- -- -- 0.24 -- -- -- -- --
176.59 0.622 3.26 -- 0.418 -- -- -- 0.208 21.8 -- -- -- --
183.43 0.631 3.25 -- -- 1.32 -- -- 0.22 -- -0.01456 22 -- --
187.01 0.638 3.25 -- -- -- -- -- 0.207 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 161.35 precipitation 0.1 10 > th dose independent rect. 19 1
11 161.35 precipitation 0.1 10 > th dose dependent rect. 19 1
21 161.39 precipitation 0.1 30 > th dose independent rect. 7 13
25 161.53 precipitation 0.1 30 > th dose independent rect. 13 7
45 161.74 precipitation 0.1 30 > th dose dependent rect. 7 13
53 161.85 precipitation 0.1 30 > th dose dependent rect. 13 7
117 162.22 precipitation 0.1 30 > th dose independent rect. 4 16
121 162.32 atmosphere 1005.0 30 > th dose independent rect. 20 5
122 162.63 precipitation 0.1 30 > th dose dependent rect. 4 16
129 162.72 temperature 25.0 270 > th dose dependent rect. 19 7
131 162.78 temperature 25.0 270 > th dose dependent rect. 19 5
138 162.97 radiation 1.0 720 > th dose independent rect. 10 7
149 163.11 atmosphere 1005.0 90 > th dose independent rect. 21 2
151 163.19 temperature 15.0 720 < th dose dependent rect. 11 13
157 163.31 humidity 90.0 30 < th dose independent rect. 20 5
169 163.44 temperature 20.0 90 < th dose independent rect. 8 1
172 163.46 temperature 15.0 720 < th dose independent rect. 23 1
184 163.46 temperature 15.0 720 < th dose dependent rect. 23 1
198 163.47 temperature 20.0 90 < th dose dependent rect. 8 1
202 163.52 temperature 20.0 10 < th dose independent rect. 8 2
208 163.52 temperature 20.0 10 < th dose dependent rect. 8 2
228 163.77 precipitation 0.1 30 > th dose independent sin 23 NA
239 163.98 humidity 90.0 720 < th dose independent rect. 10 6
242 164.00 radiation 1.0 270 < th dose dependent rect. 14 3
243 164.01 temperature 25.0 270 > th dose independent rect. 19 4
251 164.13 radiation 1.0 270 < th dose independent rect. 14 3
257 164.14 radiation 1.0 270 < th dose dependent rect. 8 9
261 164.17 humidity 90.0 720 < th dose independent rect. 11 4
270 164.24 radiation 10.0 720 > th dose independent rect. 11 4
273 164.25 atmosphere 1000.0 90 > th dose dependent rect. 20 3
277 164.28 humidity 90.0 270 < th dose independent rect. 20 1
280 164.28 atmosphere 1010.0 10 > th dose dependent rect. 10 1
283 164.29 radiation 10.0 720 > th dose independent rect. 13 1
287 164.31 precipitation 0.1 30 > th dose dependent sin 23 NA
343 164.40 temperature 25.0 270 > th dose dependent rect. 22 1
352 164.45 radiation 1.0 720 > th dose dependent rect. 13 1
367 164.57 atmosphere 995.0 720 > th dose independent rect. 10 6
369 164.57 atmosphere 1005.0 90 > th dose independent rect. 12 8
373 164.61 atmosphere 995.0 720 > th dose independent rect. 11 21
376 164.64 humidity 80.0 10 > th dose independent rect. 2 19
390 164.73 wind 7.0 30 > th dose dependent rect. 19 1
398 164.78 atmosphere 995.0 720 > th dose independent rect. 11 12
400 164.79 atmosphere 1000.0 10 < th dose independent rect. 5 6
404 164.80 humidity 60.0 14400 > th dose independent rect. 21 5
410 164.80 radiation 1.0 720 > th dose dependent rect. 11 4
420 164.81 atmosphere 1000.0 30 < th dose independent rect. 1 9
434 164.85 temperature 20.0 270 < th dose dependent rect. 6 1
440 164.87 wind 3.0 90 < th dose dependent rect. 2 1
450 164.91 atmosphere 1000.0 270 < th dose independent rect. 5 2
452 164.91 atmosphere 995.0 30 > th dose dependent rect. 20 6
458 164.93 precipitation 0.1 90 > th dose independent rect. 2 18
460 164.94 humidity 90.0 10 < th dose independent rect. 20 21
462 164.95 atmosphere 1000.0 90 < th dose independent rect. 7 3
470 164.96 humidity 50.0 30 > th dose dependent rect. 12 8
471 164.97 precipitation 0.1 1440 < th dose independent rect. 23 1
473 164.97 precipitation 0.1 1440 < th dose dependent rect. 23 1
474 164.98 atmosphere 1000.0 10 < th dose independent rect. 8 2
479 164.98 temperature 25.0 90 < th dose independent rect. 15 11
482 164.99 atmosphere 1000.0 90 < th dose independent rect. 8 1
496 164.99 humidity 90.0 10 < th dose independent rect. 7 18
497 164.99 atmosphere 1005.0 90 > th dose dependent rect. 2 1
509 165.02 radiation 40.0 720 < th dose independent rect. 13 7
510 165.02 atmosphere 995.0 720 > th dose independent rect. 17 15
511 165.03 temperature 25.0 270 < th dose independent rect. 21 1
532 165.08 atmosphere 995.0 720 > th dose independent rect. 4 18
538 165.11 temperature 20.0 30 > th dose independent rect. 8 12
548 165.16 humidity 80.0 10 > th dose independent rect. 2 13
552 165.17 radiation 10.0 90 < th dose dependent rect. 23 21
558 165.20 temperature 25.0 10 < th dose independent rect. 15 11
565 165.22 precipitation 0.1 90 > th dose independent rect. 23 21
566 165.22 humidity 80.0 30 > th dose dependent rect. 2 19
580 165.30 humidity 80.0 720 < th dose independent rect. 13 1
581 165.30 temperature 25.0 90 < th dose independent rect. 20 6
583 165.31 humidity 90.0 90 > th dose independent rect. 18 1
590 165.32 wind 7.0 10 < th dose independent rect. 8 12
592 165.32 atmosphere 1000.0 90 < th dose dependent rect. 9 1
604 165.34 radiation 30.0 90 < th dose dependent rect. 23 21
620 165.36 atmosphere 1000.0 90 < th dose dependent rect. 5 5
641 165.39 temperature 25.0 10 > th dose independent rect. 20 5
644 165.40 radiation 10.0 720 > th dose independent rect. 8 1
649 165.41 temperature 25.0 90 > th dose independent sin 12 NA
650 165.41 humidity 70.0 30 > th dose independent rect. 12 8
662 165.42 temperature 25.0 10 > th dose dependent rect. 21 3
674 165.44 temperature 30.0 10 < th dose dependent rect. 22 1
675 165.44 radiation 30.0 90 < th dose dependent rect. 1 19
692 165.47 atmosphere 1015.0 90 < th dose independent rect. 20 5
694 165.47 wind 7.0 720 < th dose independent rect. 23 12
707 165.50 atmosphere 1000.0 270 < th dose dependent rect. 6 1
712 165.50 radiation 10.0 90 < th dose dependent rect. 1 19
739 165.51 radiation 40.0 30 < th dose dependent rect. 20 14
742 165.52 precipitation 0.1 90 < th dose independent rect. 21 2
748 165.52 precipitation 0.1 90 < th dose dependent rect. 21 2
770 165.55 humidity 80.0 30 > th dose independent rect. 2 21
793 165.59 radiation 30.0 720 > th dose independent rect. 11 4
807 165.60 atmosphere 1000.0 30 < th dose dependent rect. 1 10
808 165.61 radiation 10.0 90 < th dose independent rect. 1 19
809 165.61 radiation 10.0 90 < th dose independent rect. 23 21
820 165.63 atmosphere 1015.0 90 < th dose independent rect. 21 2
831 165.64 wind 1.0 90 > th dose independent rect. 1 19
836 165.65 temperature 25.0 270 < th dose independent rect. 17 6
840 165.65 wind 9.0 10 < th dose independent rect. 23 23
844 165.66 temperature 20.0 30 > th dose independent rect. 18 2
847 165.66 radiation 20.0 30 < th dose dependent rect. 13 7
856 165.67 atmosphere 995.0 720 > th dose independent rect. 20 20
873 165.69 radiation 10.0 10 < th dose dependent rect. 2 19
876 165.70 temperature 15.0 90 > th dose independent rect. 20 5
877 165.70 precipitation 0.1 90 < th dose independent rect. 20 5
883 165.70 precipitation 0.1 90 < th dose dependent rect. 20 5
893 165.71 wind 7.0 10 < th dose independent rect. 1 19
901 165.72 humidity 60.0 30 > th dose independent rect. 20 16
902 165.72 humidity 90.0 90 < th dose dependent rect. 20 4
903 165.72 temperature 25.0 10 > th dose dependent rect. 21 6
912 165.73 temperature 25.0 270 < th dose independent rect. 17 8
924 165.74 radiation 10.0 90 < th dose independent rect. 12 8
930 165.75 radiation 40.0 720 > th dose independent rect. 13 1
943 165.76 temperature 15.0 90 > th dose independent rect. 21 2
947 165.76 precipitation 0.1 720 < th dose independent rect. 10 6
950 165.76 precipitation 0.1 720 < th dose dependent rect. 10 6
954 165.76 precipitation 0.1 90 > th dose dependent rect. 2 18
957 165.77 wind 7.0 720 < th dose independent rect. 8 3
968 165.78 wind 5.0 720 < th dose independent rect. 8 1
979 165.78 temperature 20.0 10 > th dose dependent sin 11 NA
980 165.78 radiation 40.0 43200 < th dose dependent rect. 21 5
985 165.79 temperature 25.0 270 < th dose independent rect. 16 1
988 165.79 humidity 90.0 30 < th dose independent rect. 20 8
992 165.79 humidity 90.0 30 > th dose independent rect. 11 17
995 165.79 humidity 90.0 30 > th dose independent rect. 8 20
998 165.79 temperature 15.0 720 > th dose independent rect. 9 23