FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0589400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0223) R2 : 0.000812
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0286 (0.047) R2dN8 : 0.00105 R2N8 : 0.000812
σ : 0.42
deviance : 81.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.2 0.399 2.99 -0.213 0.0616 -0.452 -0.386 2.65 -0.0641 11.4 1.002 15 -- --
78.26 0.412 2.96 -0.109 0.0949 -0.272 -0.279 -- -0.0344 9.58 1.1 9 -- --
72.83 0.397 2.99 -0.227 0.0656 -0.453 -- 2.54 -0.066 11.5 1.022 14 -- --
77.99 0.414 2.96 -0.109 0.0813 -0.299 -- -- -0.0465 9.2 0.8027 4 -- --
73.08 0.398 2.99 -0.226 -- -0.439 -- 2.54 -0.065 -- 1.027 14 -- --
79.88 0.419 2.96 -0.084 0.106 -- -0.362 -- -0.0409 7.62 -- -- -- --
80.23 0.419 2.96 -0.0935 0.108 -- -- -- -0.0407 7.12 -- -- -- --
78.37 0.414 2.96 -0.109 -- -0.302 -- -- -0.0462 -- 0.8 4 -- --
78.3 0.414 2.96 -- 0.0814 -0.293 -- -- -0.0343 9.25 0.8027 4 -- --
80.85 0.42 2.96 -0.0915 -- -- -- -- -0.0387 -- -- -- -- --
80.46 0.42 2.96 -- 0.107 -- -- -- -0.0303 7.17 -- -- -- --
78.69 0.414 2.96 -- -- -0.296 -- -- -0.034 -- 0.8 4 -- --
81.07 0.42 2.96 -- -- -- -- -- -0.0286 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.65 wind 1.0 10 < th dose independent rect. 2 8
5 70.30 wind 1.0 10 < th dose independent rect. 9 19
10 70.55 wind 1.0 10 > th dose independent sin 4 NA
20 71.07 wind 1.0 10 < th dose independent rect. 24 10
22 71.08 wind 1.0 10 < th dose independent rect. 2 21
31 71.39 wind 1.0 10 < th dose independent sin 4 NA
54 71.90 wind 1.0 10 < th dose independent rect. 2 2
56 71.94 wind 1.0 10 < th dose independent rect. 24 23
64 72.16 wind 1.0 10 > th dose independent rect. 3 23
66 72.37 wind 1.0 10 > th dose independent no NA NA
70 72.60 wind 9.0 720 > th dose dependent rect. 12 1
78 72.77 wind 1.0 10 < th dose dependent rect. 2 8
80 72.77 wind 1.0 10 < th dose dependent rect. 2 11
86 72.82 wind 9.0 720 > th dose independent rect. 12 1
87 72.82 wind 1.0 10 < th dose independent rect. 22 12
185 73.09 wind 1.0 10 < th dose independent no NA NA
214 73.35 wind 1.0 10 > th dose independent rect. 1 23
218 73.46 wind 1.0 10 < th dose independent rect. 24 4
219 73.47 radiation 1.0 14400 < th dose dependent rect. 3 1
223 73.49 wind 1.0 10 < th dose dependent rect. 2 21
225 73.52 wind 1.0 10 > th dose independent sin 18 NA
229 73.57 wind 9.0 30 < th dose independent rect. 3 23
233 73.62 wind 1.0 10 < th dose independent sin 18 NA
234 73.63 temperature 20.0 30 > th dose dependent rect. 2 1
235 73.64 wind 1.0 10 < th dose independent rect. 22 6
248 73.66 wind 3.0 30 < th dose dependent rect. 2 1
249 73.67 temperature 20.0 30 > th dose independent rect. 2 1
255 73.69 atmosphere 1005.0 30 > th dose independent rect. 2 1
265 73.72 atmosphere 1000.0 30 > th dose dependent rect. 2 1
271 73.74 humidity 80.0 30 > th dose independent rect. 2 1
274 73.75 humidity 50.0 30 > th dose dependent rect. 2 1
277 73.76 temperature 10.0 30 > th dose independent rect. 2 1
279 73.76 temperature 30.0 30 < th dose independent rect. 2 1
280 73.76 humidity 50.0 30 > th dose independent rect. 2 1
284 73.76 atmosphere 1010.0 30 < th dose independent rect. 2 1
286 73.76 radiation 1.0 30 < th dose independent rect. 2 1
291 73.76 precipitation 0.1 30 < th dose independent rect. 2 1
293 73.76 temperature 10.0 30 > th dose independent rect. 3 23
296 73.76 radiation 1.0 30 < th dose dependent rect. 2 1
301 73.76 precipitation 0.1 30 < th dose dependent rect. 2 1
308 73.82 wind 1.0 10 < th dose dependent sin 2 NA
311 73.84 atmosphere 1015.0 30 < th dose dependent rect. 2 1
317 73.88 wind 9.0 720 > th dose independent rect. 12 4
329 73.95 wind 1.0 10 > th dose independent rect. 23 23
334 73.97 wind 9.0 1440 < th dose independent rect. 3 1
335 73.97 temperature 10.0 1440 > th dose independent rect. 3 1
338 73.97 temperature 30.0 1440 < th dose independent rect. 3 1
342 73.97 humidity 50.0 1440 > th dose independent rect. 3 1
351 73.97 atmosphere 995.0 1440 > th dose independent rect. 3 1
352 73.97 radiation 1.0 1440 < th dose independent rect. 3 1
372 73.97 temperature 10.0 1440 > th dose independent rect. 4 23
376 73.97 radiation 1.0 1440 < th dose dependent rect. 3 1
387 73.98 temperature 30.0 30 < th dose dependent rect. 2 1
397 74.03 wind 1.0 10 < th dose dependent rect. 9 19
401 74.06 humidity 60.0 1440 > th dose independent rect. 5 4
412 74.11 wind 1.0 10 > th dose independent rect. 21 23
414 74.13 wind 1.0 30 > th dose independent rect. 2 1
415 74.13 wind 9.0 1440 < th dose independent rect. 13 1
489 74.33 atmosphere 995.0 30 > th dose independent rect. 3 23
493 74.37 wind 1.0 10 < th dose independent rect. 9 1
497 74.38 precipitation 0.1 30 < th dose independent rect. 3 23
498 74.38 precipitation 0.1 30 < th dose dependent rect. 3 23
501 74.40 wind 1.0 10 > th dose independent rect. 13 23
515 74.53 wind 1.0 10 > th dose independent rect. 5 23
526 74.56 wind 1.0 10 < th dose dependent rect. 9 1
551 74.62 humidity 60.0 1440 > th dose independent rect. 21 12
582 74.67 wind 3.0 10 < th dose dependent rect. 24 4
584 74.68 humidity 60.0 270 < th dose independent rect. 8 1
610 74.68 humidity 60.0 270 < th dose dependent rect. 8 1
637 74.68 humidity 60.0 90 < th dose dependent rect. 18 15
652 74.69 humidity 60.0 90 < th dose independent rect. 18 15
669 74.70 humidity 60.0 10 < th dose independent sin 10 NA
701 74.71 humidity 60.0 10 < th dose independent rect. 10 1
703 74.71 humidity 60.0 30 < th dose independent rect. 17 17
824 74.75 wind 1.0 10 > th dose independent rect. 15 23
869 74.77 humidity 60.0 1440 > th dose independent rect. 24 9
875 74.78 wind 1.0 10 > th dose independent rect. 19 23
950 74.92 wind 1.0 10 > th dose independent rect. 17 23
954 74.94 humidity 60.0 30 > th dose independent sin 10 NA
964 75.02 wind 9.0 1440 < th dose independent rect. 10 7
971 75.04 humidity 60.0 1440 > th dose independent rect. 2 7
974 75.04 radiation 40.0 30 > th dose dependent rect. 9 1