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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0615300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1618 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.81 (0.0347) R2 : 0.0269
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.259 (0.0731) R2dN8 : 0.0347 R2N8 : 0.0269
σ : 0.654
deviance : 196.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.75 0.649 2.83 -0.247 0.211 0.148 -0.113 1.22 0.22 6.24 25 1419 -- --
191.67 0.645 2.78 0.137 0.211 0.225 -0.268 -- 0.355 5.66 23.22 1261 -- --
190.77 0.643 2.83 -0.25 0.21 0.147 -- 1.23 0.22 6.38 25 1418 -- --
191.71 0.645 2.78 0.133 0.211 0.223 -- -- 0.36 6.18 23.3 1265 -- --
192.85 0.647 2.83 -0.217 -- 0.174 -- 1.21 0.229 -- 24.9 2120 -- --
193.93 0.653 2.8 0.0472 0.197 -- -0.142 -- 0.26 6.35 -- -- -- --
193.97 0.652 2.8 0.0459 0.197 -- -- -- 0.261 6.62 -- -- -- --
193.59 0.648 2.79 0.146 -- 0.264 -- -- 0.351 -- 25.9 1823 -- --
192.17 0.646 2.79 -- 0.211 0.213 -- -- 0.343 6.11 23.5 1284 -- --
195.99 0.654 2.8 0.0506 -- -- -- -- 0.265 -- -- -- -- --
194.03 0.652 2.8 -- 0.197 -- -- -- 0.256 6.6 -- -- -- --
194.1 0.649 2.79 -- -- 0.228 -- -- 0.324 -- 25.87 1823 -- --
196.06 0.654 2.81 -- -- -- -- -- 0.259 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 178.58 humidity 60.0 90 < th dose dependent rect. 9 1
16 178.95 humidity 60.0 90 < th dose independent rect. 9 1
31 180.24 humidity 90.0 10 < th dose dependent rect. 3 2
33 180.68 humidity 80.0 90 < th dose independent rect. 2 2
34 180.69 humidity 80.0 90 < th dose dependent rect. 2 2
38 180.97 temperature 25.0 270 > th dose independent rect. 1 1
39 180.98 humidity 80.0 10 < th dose independent rect. 3 1
54 181.02 temperature 25.0 90 > th dose independent rect. 1 5
56 181.05 temperature 25.0 270 > th dose independent rect. 1 3
72 181.85 temperature 25.0 270 > th dose dependent rect. 1 4
80 182.21 temperature 25.0 270 > th dose dependent rect. 1 1
105 183.42 temperature 25.0 1440 < th dose independent rect. 1 1
108 183.55 humidity 80.0 90 < th dose dependent rect. 2 5
131 184.30 atmosphere 1005.0 270 > th dose dependent rect. 1 2
132 184.37 atmosphere 1005.0 10 > th dose dependent rect. 2 3
144 184.79 temperature 20.0 90 < th dose dependent rect. 2 1
152 184.89 temperature 25.0 720 < th dose independent rect. 22 8
167 185.14 wind 3.0 10 > th dose dependent rect. 3 1
168 185.15 humidity 80.0 90 < th dose independent rect. 2 7
171 185.24 temperature 25.0 90 > th dose independent rect. 4 1
174 185.28 temperature 25.0 10 > th dose independent rect. 4 1
176 185.30 temperature 25.0 90 > th dose dependent rect. 4 1
195 185.57 humidity 80.0 270 < th dose dependent rect. 24 7
198 185.64 humidity 80.0 270 < th dose dependent rect. 24 5
222 185.93 humidity 80.0 90 < th dose independent rect. 2 5
226 185.96 wind 1.0 30 > th dose independent rect. 4 1
239 186.06 temperature 25.0 720 < th dose independent rect. 22 4
244 186.13 radiation 1.0 43200 < th dose dependent rect. 3 1
264 186.17 wind 5.0 720 > th dose dependent rect. 22 1
279 186.27 humidity 80.0 1440 > th dose independent rect. 3 1
295 186.38 temperature 20.0 90 < th dose independent rect. 2 1
419 187.06 wind 5.0 720 > th dose independent rect. 22 1
420 187.07 temperature 25.0 720 < th dose independent sin 11 NA
449 187.15 temperature 25.0 720 > th dose independent sin 11 NA
455 187.16 atmosphere 1005.0 30 > th dose dependent rect. 4 1
477 187.26 temperature 20.0 10 > th dose dependent rect. 2 1
485 187.30 atmosphere 1005.0 30 > th dose independent rect. 2 1
486 187.30 wind 3.0 30 < th dose dependent rect. 2 1
490 187.32 humidity 80.0 30 > th dose independent rect. 2 1
492 187.32 atmosphere 995.0 30 > th dose dependent rect. 2 1
496 187.33 wind 9.0 30 < th dose independent rect. 2 1
497 187.33 temperature 10.0 30 > th dose independent rect. 2 1
499 187.33 temperature 30.0 30 < th dose independent rect. 2 1
500 187.33 humidity 50.0 30 > th dose independent rect. 2 1
503 187.33 atmosphere 995.0 30 > th dose independent rect. 2 1
504 187.33 atmosphere 1010.0 30 < th dose independent rect. 2 1
506 187.33 radiation 1.0 30 < th dose independent rect. 2 1
511 187.33 precipitation 0.1 30 < th dose independent rect. 2 1
514 187.33 temperature 10.0 30 > th dose independent rect. 3 23
517 187.33 radiation 1.0 30 < th dose dependent rect. 2 1
522 187.33 precipitation 0.1 30 < th dose dependent rect. 2 1
525 187.34 wind 3.0 30 < th dose independent rect. 2 1
527 187.34 humidity 50.0 30 > th dose dependent rect. 2 1
555 187.39 atmosphere 1015.0 30 < th dose dependent rect. 2 1
569 187.44 humidity 80.0 720 < th dose independent rect. 21 7
577 187.47 wind 9.0 1440 < th dose independent rect. 3 1
578 187.47 temperature 10.0 1440 > th dose independent rect. 3 1
581 187.47 temperature 30.0 1440 < th dose independent rect. 3 1
585 187.47 humidity 50.0 1440 > th dose independent rect. 3 1
594 187.47 atmosphere 995.0 1440 > th dose independent rect. 3 1
595 187.47 radiation 1.0 1440 < th dose independent rect. 3 1
615 187.47 temperature 10.0 1440 > th dose independent rect. 4 23
618 187.47 radiation 1.0 1440 < th dose dependent rect. 3 1
640 187.53 temperature 30.0 30 < th dose dependent rect. 2 1
670 187.62 wind 1.0 30 > th dose independent rect. 2 1
671 187.62 humidity 80.0 30 > th dose independent rect. 4 1
683 187.64 humidity 80.0 720 < th dose dependent rect. 21 7
722 187.76 temperature 25.0 10 > th dose independent rect. 2 3
785 187.84 wind 5.0 30 < th dose independent rect. 4 1
798 187.86 temperature 10.0 30 > th dose independent rect. 4 1
800 187.86 temperature 30.0 30 < th dose independent rect. 4 1
801 187.86 humidity 50.0 30 > th dose independent rect. 4 1
805 187.86 atmosphere 995.0 30 > th dose independent rect. 4 1
806 187.86 atmosphere 1010.0 30 < th dose independent rect. 4 1
808 187.86 radiation 1.0 30 < th dose independent rect. 4 1
817 187.86 temperature 10.0 30 > th dose independent rect. 5 23
819 187.86 humidity 70.0 30 > th dose dependent rect. 4 1
821 187.86 radiation 1.0 30 < th dose dependent rect. 4 1
830 187.87 humidity 50.0 30 > th dose dependent rect. 4 1
834 187.88 precipitation 0.1 30 < th dose independent rect. 4 1
835 187.88 precipitation 0.1 30 < th dose dependent rect. 4 1
837 187.89 atmosphere 1010.0 30 < th dose dependent rect. 4 1
858 187.94 atmosphere 995.0 30 > th dose independent rect. 3 23
869 187.98 wind 9.0 30 < th dose dependent rect. 4 1
927 188.18 temperature 30.0 30 < th dose dependent rect. 4 1
965 188.26 wind 9.0 30 < th dose independent rect. 3 23
971 188.27 precipitation 0.1 30 < th dose independent rect. 3 23
974 188.27 precipitation 0.1 30 < th dose dependent rect. 3 23