Os12g0590400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0590400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.65 | 0.197 | 10.5 | -0.0487 | 0.319 | -0.394 | -0.0484 | -0.901 | 0.0383 | 4.61 | 24.9 | 2156 | -- | -- |
| 19.09 | 0.204 | 10.5 | -0.215 | 0.307 | -0.25 | -0.0435 | -- | 0.0216 | 4.56 | 32.7 | 2493 | -- | -- |
| 17.66 | 0.196 | 10.5 | -0.049 | 0.319 | -0.397 | -- | -0.902 | 0.0382 | 4.61 | 24.9 | 2136 | -- | -- |
| 18.78 | 0.202 | 10.5 | -0.226 | 0.334 | -0.263 | -- | -- | 0.0119 | 4.54 | 25.1 | 2168 | -- | -- |
| 22.4 | 0.22 | 10.5 | -0.0426 | -- | -0.456 | -- | -1.02 | 0.0407 | -- | 25.3 | 2643 | -- | -- |
| 20.34 | 0.211 | 10.5 | -0.118 | 0.323 | -- | -0.0504 | -- | 0.0738 | 4.29 | -- | -- | -- | -- |
| 20.34 | 0.211 | 10.5 | -0.118 | 0.323 | -- | -- | -- | 0.0741 | 4.29 | -- | -- | -- | -- |
| 23.95 | 0.228 | 10.5 | -0.23 | -- | -0.311 | -- | -- | 0.0158 | -- | 32.6 | 2639 | -- | -- |
| 19.9 | 0.208 | 10.5 | -- | 0.321 | -0.207 | -- | -- | 0.0463 | 4.43 | 25.13 | 1963 | -- | -- |
| 25.95 | 0.238 | 10.5 | -0.105 | -- | -- | -- | -- | 0.0827 | -- | -- | -- | -- | -- |
| 20.71 | 0.213 | 10.5 | -- | 0.32 | -- | -- | -- | 0.0872 | 4.3 | -- | -- | -- | -- |
| 25.01 | 0.233 | 10.5 | -- | -- | -0.23 | -- | -- | 0.0381 | -- | 26 | 2555 | -- | -- |
| 26.25 | 0.239 | 10.5 | -- | -- | -- | -- | -- | 0.0943 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 3 | 15.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 17 | 16.12 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 18 | 16.13 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 30 | 16.29 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 6 |
| 33 | 16.30 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 51 | 16.39 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 5 |
| 58 | 16.43 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 61 | 16.44 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 86 | 16.49 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 107 | 16.55 | humidity | 90 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 108 | 16.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 109 | 16.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 113 | 16.57 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 118 | 16.58 | wind | 3 | 14400 | < th | dose independent | sin | 6 | NA |
| 119 | 16.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 120 | 16.58 | wind | 1 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 130 | 16.60 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 142 | 16.62 | wind | 3 | 14400 | < th | dose dependent | sin | 5 | NA |
| 145 | 16.62 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 17 |
| 147 | 16.63 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 159 | 16.65 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 166 | 16.65 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 170 | 16.66 | wind | 3 | 14400 | > th | dose independent | sin | 5 | NA |
| 172 | 16.66 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 189 | 16.67 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 206 | 16.68 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 13 |
| 213 | 16.69 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 275 | 16.73 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 287 | 16.73 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 303 | 16.74 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 316 | 16.75 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 452 | 16.84 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 512 | 16.88 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 557 | 16.91 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 580 | 16.92 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 640 | 16.95 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 716 | 17.01 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 748 | 17.02 | humidity | 90 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 770 | 17.03 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 18 |
| 870 | 17.09 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 885 | 17.10 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 892 | 17.10 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 949 | 17.13 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 976 | 17.14 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 978 | 17.15 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 991 | 17.15 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 19 |