BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0590400 Os12g0590400|AK070028
(160 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0590400 Conserved hypothetical protein 283 4e-77
Os12g0589400 Conserved hypothetical protein 210 5e-55
Os12g0565000 Conserved hypothetical protein 137 3e-33
Os12g0589200 132 9e-32
Os12g0587200 Protein of unknown function DUF1618 domain con... 115 1e-26
Os10g0521200 105 2e-23
>Os12g0590400 Conserved hypothetical protein
Length = 160
Score = 283 bits (724), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MEAPSAKPRSRRATHGYMVLDRIVRCWSGVGGDDDPTASEIAYTCSGHPIRVSLRVADPP 60
MEAPSAKPRSRRATHGYMVLDRIVRCWSGVGGDDDPTASEIAYTCSGHPIRVSLRVADPP
Sbjct: 1 MEAPSAKPRSRRATHGYMVLDRIVRCWSGVGGDDDPTASEIAYTCSGHPIRVSLRVADPP 60
Query: 61 AVSRLYVHRPGWSRVYDLGDAEVIAAHRGSILLSARVPFADLDTIAPGQFPLDYFVYTAR 120
AVSRLYVHRPGWSRVYDLGDAEVIAAHRGSILLSARVPFADLDTIAPGQFPLDYFVYTAR
Sbjct: 61 AVSRLYVHRPGWSRVYDLGDAEVIAAHRGSILLSARVPFADLDTIAPGQFPLDYFVYTAR 120
Query: 121 PGEGLRPSLTRLPPCFIGGF 140
PGEGLRPSLTRLPPCFIGGF
Sbjct: 121 PGEGLRPSLTRLPPCFIGGF 140
>Os12g0589400 Conserved hypothetical protein
Length = 477
Score = 210 bits (534), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 108/131 (82%), Positives = 114/131 (87%), Gaps = 7/131 (5%)
Query: 15 HGYMVLDRIVRCWSGVGGDDD----PTASEIAYTCSGHPIRVSLRVADPPAVSRLYVHRP 70
HG+MVLDRIVRCWS PT+SE+AYTCSGHPIRVSLRVADPPAVSRLYVHRP
Sbjct: 4 HGWMVLDRIVRCWSDDDDVVGGDDDPTSSEVAYTCSGHPIRVSLRVADPPAVSRLYVHRP 63
Query: 71 GWSRVYDLGDAEVIAAHRGSILLSARVPFADLDTIAPGQFPLDYFVYTARPGEGL-RPSL 129
GW RVYDLGDAE IAAHRGSILLSARVPFADL T+APGQFP+DY+VYTA GEGL RPSL
Sbjct: 64 GWPRVYDLGDAEAIAAHRGSILLSARVPFADLGTVAPGQFPVDYYVYTA--GEGLRRPSL 121
Query: 130 TRLPPCFIGGF 140
TRLPPCFIGGF
Sbjct: 122 TRLPPCFIGGF 132
>Os12g0565000 Conserved hypothetical protein
Length = 277
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 88/129 (68%), Gaps = 3/129 (2%)
Query: 14 THGYMVLDRIVRCWSG-VGGDDDPTASEIAYTCSGHPIRVSLRVADPPAVSRLYVHRPG- 71
HG+++LDR V G V D TASEIA TCSG +R SLRVADPPAVSRL +HR
Sbjct: 7 VHGWIILDRFVHSSDGDVDAADVVTASEIALTCSGRRVRASLRVADPPAVSRLRIHRLDQ 66
Query: 72 -WSRVYDLGDAEVIAAHRGSILLSARVPFADLDTIAPGQFPLDYFVYTARPGEGLRPSLT 130
W Y L A+V+AAHRGSIL ARVPFAD + + PG FP+DYFVYTA SLT
Sbjct: 67 PWPDAYILRHAQVVAAHRGSILFWARVPFADDEFVVPGYFPVDYFVYTAGASGAASSSLT 126
Query: 131 RLPPCFIGG 139
RLPPCFIGG
Sbjct: 127 RLPPCFIGG 135
>Os12g0589200
Length = 468
Score = 132 bits (333), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 79/133 (59%), Positives = 90/133 (67%), Gaps = 7/133 (5%)
Query: 15 HGYMVLDRIVRC----WSGVGGDDDPTASEIAYTCSGHPIRVSLRVADPPAVSRLYVHRP 70
H +++LDR C G DDD TASE A+TCSG IR SLRVADPPAVSRL++HR
Sbjct: 21 HSWIILDRCAHCSDGDVVGDDDDDDVTASESAHTCSGRRIRASLRVADPPAVSRLHLHRL 80
Query: 71 G--WSRVYDLGDAEVIAAHRGSILLSARVPFADLDTIAPGQFPLDYFVYTARPGEGLR-P 127
W YDL AEV+AAH G+IL VPF+D +APG FP+DYFVYTA G P
Sbjct: 81 DGPWPDAYDLHHAEVLAAHNGAILFRTGVPFSDPGFVAPGHFPVDYFVYTAGGGAAASPP 140
Query: 128 SLTRLPPCFIGGF 140
SLTRLPPCFIGGF
Sbjct: 141 SLTRLPPCFIGGF 153
>Os12g0587200 Protein of unknown function DUF1618 domain containing protein
Length = 507
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 87/129 (67%), Gaps = 7/129 (5%)
Query: 17 YMVLDRIVRC-WS--GVGGDDDPTASEIAYTCSGHPIRVSLRVADPPAVSRLYVHR-PGW 72
++VLD VRC W ++D TAS++ TC+G P+R SLRVADPPAVSRLY+H P W
Sbjct: 16 WIVLDPYVRCSWRRRHKYEEEDITASKVGRTCTGFPVRASLRVADPPAVSRLYLHCPPQW 75
Query: 73 -SRVYDLGDAEVIAAHRGSILLSARVPFADLDTIAPGQFPLDYFVYTARPGEGLRPSLTR 131
+ + ++ +VIAAHRG IL A VPF + G +PLDYF+Y+A P +P LTR
Sbjct: 76 PADLPEVRYPDVIAAHRGCILFVAAVPFEEPGFNVDGHYPLDYFIYSASPSS--QPLLTR 133
Query: 132 LPPCFIGGF 140
LPPCF+GGF
Sbjct: 134 LPPCFVGGF 142
>Os10g0521200
Length = 195
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 62/98 (63%), Gaps = 7/98 (7%)
Query: 50 IRVSLRVADPPAV-------SRLYVHRPGWSRVYDLGDAEVIAAHRGSILLSARVPFADL 102
IR+SLRVADPPA RP W YDL AEV+AAH GSIL RVPFAD
Sbjct: 6 IRISLRVADPPAAGRLPPLHPPPRRRRPTWPNAYDLRHAEVVAAHHGSILFRTRVPFADP 65
Query: 103 DTIAPGQFPLDYFVYTARPGEGLRPSLTRLPPCFIGGF 140
D +APG FP+DYFVYT PSLTRLPPCFI GF
Sbjct: 66 DFVAPGHFPVDYFVYTTDAAAASPPSLTRLPPCFIDGF 103
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.141 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,926,426
Number of extensions: 241191
Number of successful extensions: 596
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 6
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)