BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0560300 Os12g0560300|AK060332
(193 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0560300 Similar to NTGB2 (Fragment) 329 8e-91
Os01g0338000 Similar to GTP-binding protein SAR1A 317 3e-87
Os01g0254000 Similar to NTGB2 (Fragment) 315 1e-86
Os06g0225000 Similar to NTGB3 (Fragment) 257 5e-69
Os08g0248900 Similar to ADP-ribosylation factor 3 67 7e-12
>Os12g0560300 Similar to NTGB2 (Fragment)
Length = 193
Score = 329 bits (844), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 163/193 (84%), Positives = 163/193 (84%)
Query: 1 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFSESKKEXXXXXXXXXXX 120
IGKIKFKAFDLGGHQIARRVW ERFSESKKE
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDSLA 120
Query: 121 TVPFLILGNKIDIPYAASEEELRYHMGLSNFTTGKGRVSLGESNVRPLEVFMCSIVRKMG 180
TVPFLILGNKIDIPYAASEEELRYHMGLSNFTTGKGRVSLGESNVRPLEVFMCSIVRKMG
Sbjct: 121 TVPFLILGNKIDIPYAASEEELRYHMGLSNFTTGKGRVSLGESNVRPLEVFMCSIVRKMG 180
Query: 181 YGDGFKWVSQYIK 193
YGDGFKWVSQYIK
Sbjct: 181 YGDGFKWVSQYIK 193
>Os01g0338000 Similar to GTP-binding protein SAR1A
Length = 193
Score = 317 bits (813), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 156/193 (80%), Positives = 161/193 (83%)
Query: 1 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFL DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1 MFLWDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFSESKKEXXXXXXXXXXX 120
IGKIKFKAFDLGGHQIARRVW ERF+ESKKE
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDDSLA 120
Query: 121 TVPFLILGNKIDIPYAASEEELRYHMGLSNFTTGKGRVSLGESNVRPLEVFMCSIVRKMG 180
VPFLILGNKIDIPYAASEEELRYH+GLSNFTTGKG+VSLGESNVRPLEVFMCS+VRKMG
Sbjct: 121 AVPFLILGNKIDIPYAASEEELRYHLGLSNFTTGKGKVSLGESNVRPLEVFMCSVVRKMG 180
Query: 181 YGDGFKWVSQYIK 193
YGDGFKWVSQYIK
Sbjct: 181 YGDGFKWVSQYIK 193
>Os01g0254000 Similar to NTGB2 (Fragment)
Length = 193
Score = 315 bits (807), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 152/193 (78%), Positives = 161/193 (83%)
Query: 1 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFSESKKEXXXXXXXXXXX 120
IGKIKFKAFDLGGHQIARRVW ERF+ESKKE
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAADKERFAESKKELDALLADDSLA 120
Query: 121 TVPFLILGNKIDIPYAASEEELRYHMGLSNFTTGKGRVSLGESNVRPLEVFMCSIVRKMG 180
TVPFLILGNKIDIPYAASEEELRY++GLSNFTTGKG V+L +SNVRPLE+FMCS+VRKMG
Sbjct: 121 TVPFLILGNKIDIPYAASEEELRYYLGLSNFTTGKGNVNLADSNVRPLEIFMCSVVRKMG 180
Query: 181 YGDGFKWVSQYIK 193
YG+GFKW+SQYIK
Sbjct: 181 YGEGFKWMSQYIK 193
>Os06g0225000 Similar to NTGB3 (Fragment)
Length = 194
Score = 257 bits (656), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 123/192 (64%), Positives = 143/192 (74%)
Query: 2 FLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI 61
FL+DWFY VLAS+GLWQKEAKILFLGLDNAGKTTL +ML E L HQPTQ+PTSEELSI
Sbjct: 3 FLLDWFYDVLASIGLWQKEAKILFLGLDNAGKTTLFYMLSQENLAVHQPTQHPTSEELSI 62
Query: 62 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFSESKKEXXXXXXXXXXXT 121
G+I+FKAFDLGGH+IARRVW RF+ESK E
Sbjct: 63 GRIRFKAFDLGGHRIARRVWRDYYAQVDAVVYVVDAADRCRFAESKMELDALLSDDALAG 122
Query: 122 VPFLILGNKIDIPYAASEEELRYHMGLSNFTTGKGRVSLGESNVRPLEVFMCSIVRKMGY 181
VPFL+LGNKIDIPYA E+EL Y++GL+ TTGKG V+L + VRP+EVFMCS+VR+MGY
Sbjct: 123 VPFLVLGNKIDIPYAVPEQELCYYLGLTGLTTGKGNVNLAGTGVRPVEVFMCSVVRRMGY 182
Query: 182 GDGFKWVSQYIK 193
GDGF+W+SQYIK
Sbjct: 183 GDGFRWMSQYIK 194
>Os08g0248900 Similar to ADP-ribosylation factor 3
Length = 182
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 12/176 (6%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 77
+EA+IL LGLDNAGKTT+L+ L+ +V PT E + IKF+ +DLGG
Sbjct: 15 NREARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
Query: 78 RRVWXXXXXXXXXXXXXXXXXXXERFSESKKEXXXXXXXXXXXTVPFLILGNKIDIPYAA 137
R W +R +K+E L+ NK D+P A
Sbjct: 75 RPYWRCYFPNTQAIIYVVDSSDTDRLVTAKEEFHAILEEDELKGAVVLVYANKQDLPGAL 134
Query: 138 SEEELRYHMGLSNFTTGKGRVSLGESNVRPLEVFMCSIVRKMGYGDGFKWVSQYIK 193
+ + + L + R +F S ++ G +G W+S +K
Sbjct: 135 DDAAITESLELHKIKS------------RQWAIFKTSAIKGEGLFEGLDWLSNALK 178
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,498,283
Number of extensions: 188528
Number of successful extensions: 461
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 5
Length of query: 193
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 98
Effective length of database: 12,075,471
Effective search space: 1183396158
Effective search space used: 1183396158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)