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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0225000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NTGB3 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.0475) R2 : 0.121
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.5 (0.317) R2dE : 0.123 R2E : 0.12
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0497 (0.101) R2dN8 : 0.000626 R2N8 : -0.00172
σ : 0.89
deviance : 365.08
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 92.64
memory length : 148
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.8
open length of G : 18

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
361.04 0.893 3.2 0.0848 0.269 1.82 -0.759 0.58 0.0912 0.906 91.51 227 5.28 18.7
357.72 0.881 3.21 0.176 0.307 2.29 -0.079 -- 0.0667 2.77 92.45 160 5.83 17.9
360.25 0.884 3.2 0.108 0.362 2.09 -- 0.721 0.0812 2.22 92.28 204 5.66 18.3
357.4 0.88 3.21 0.144 0.374 2.32 -- -- 0.0525 3.21 92.62 159 5.87 17.9
364.31 0.889 3.21 0.136 -- 2.45 -- -0.487 0.0576 -- 92.51 160 5.81 18
399.44 0.937 3.23 0.235 0.495 -- 0.257 -- -0.0483 3.63 -- -- -- --
399.54 0.936 3.23 0.231 0.494 -- -- -- -0.0496 3.31 -- -- -- --
364.6 0.889 3.21 0.137 -- 2.34 -- -- 0.0698 -- 92.45 162 5.78 18
357.55 0.881 3.22 -- 0.383 2.45 -- -- 0.0321 3.25 92.81 147 5.85 17.9
413.32 0.95 3.23 0.252 -- -- -- -- -0.0366 -- -- -- -- --
400.94 0.937 3.24 -- 0.499 -- -- -- -0.0753 3.31 -- -- -- --
365.08 0.89 3.21 -- -- 2.5 -- -- 0.0497 -- 92.64 148 5.8 18
414.99 0.951 3.24 -- -- -- -- -- -0.0645 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 364.75 humidity 90.0 270 > th dose dependent rect. 5 19
4 366.10 wind 1.0 10 < th dose independent rect. 8 2
8 367.25 wind 1.0 270 < th dose independent rect. 5 3
11 368.00 wind 1.0 10 < th dose dependent rect. 8 2
16 368.40 wind 3.0 90 < th dose dependent rect. 7 3
17 368.53 humidity 80.0 30 > th dose independent rect. 7 4
19 368.78 wind 1.0 270 < th dose dependent rect. 5 3
20 368.94 wind 3.0 90 < th dose independent rect. 6 5
35 369.89 humidity 90.0 270 > th dose dependent rect. 20 1
47 370.64 humidity 80.0 90 > th dose dependent rect. 7 3
48 370.65 humidity 80.0 30 > th dose dependent rect. 6 21
52 370.98 atmosphere 1005.0 10 < th dose independent rect. 22 2
70 371.34 wind 9.0 270 < th dose dependent rect. 4 11
107 372.52 wind 1.0 270 < th dose dependent rect. 2 8
117 372.74 wind 1.0 270 < th dose dependent rect. 2 10
169 373.67 humidity 80.0 10 > th dose independent rect. 6 21
188 374.01 wind 1.0 270 < th dose independent rect. 3 7
223 374.65 humidity 60.0 720 > th dose dependent rect. 5 3
226 374.70 humidity 80.0 90 > th dose dependent rect. 6 7
232 374.74 wind 9.0 720 < th dose dependent rect. 5 4
242 374.83 humidity 90.0 270 > th dose independent rect. 20 1
249 374.89 humidity 80.0 90 > th dose dependent rect. 6 9
254 374.96 humidity 90.0 90 > th dose independent rect. 6 18
260 375.00 humidity 90.0 270 > th dose independent rect. 4 20
287 375.23 wind 1.0 30 < th dose independent rect. 23 1
297 375.33 wind 1.0 270 < th dose dependent sin 4 NA
305 375.36 wind 9.0 10 < th dose dependent rect. 6 11
321 375.46 wind 1.0 270 < th dose dependent rect. 2 16
326 375.48 humidity 90.0 270 > th dose dependent sin 22 NA
327 375.49 atmosphere 1000.0 720 > th dose independent rect. 17 3
343 375.58 temperature 25.0 270 < th dose independent rect. 1 2
366 375.76 wind 1.0 30 < th dose independent rect. 17 7
380 375.83 temperature 20.0 90 > th dose independent rect. 5 12
388 375.89 temperature 20.0 270 > th dose independent rect. 6 1
391 375.91 radiation 10.0 90 < th dose independent rect. 7 3
415 376.01 atmosphere 1005.0 270 > th dose independent rect. 6 2
416 376.01 humidity 90.0 90 > th dose independent rect. 7 7
432 376.13 precipitation 0.1 270 < th dose independent rect. 15 13
433 376.13 precipitation 0.1 270 < th dose dependent rect. 15 13
458 376.28 temperature 20.0 90 > th dose independent rect. 5 10
466 376.36 wind 1.0 720 > th dose independent rect. 7 5
474 376.38 wind 7.0 270 < th dose independent rect. 4 11
489 376.50 humidity 90.0 270 > th dose dependent rect. 10 12
514 376.70 temperature 20.0 90 > th dose independent rect. 5 6
519 376.74 radiation 10.0 90 < th dose independent rect. 6 5
545 376.93 humidity 80.0 10 > th dose dependent rect. 10 1
569 377.14 humidity 80.0 30 > th dose independent rect. 23 12
576 377.19 atmosphere 1005.0 90 < th dose independent rect. 19 6
617 377.44 atmosphere 1005.0 90 > th dose dependent rect. 6 3
618 377.45 temperature 20.0 270 > th dose independent rect. 5 3
676 377.74 atmosphere 1005.0 90 > th dose independent rect. 23 7
681 377.75 atmosphere 1015.0 270 < th dose dependent rect. 18 6
698 377.84 humidity 70.0 720 > th dose dependent rect. 22 1
710 377.88 atmosphere 1005.0 270 > th dose independent rect. 1 2
731 377.99 radiation 20.0 270 < th dose independent rect. 19 13
736 378.00 atmosphere 1000.0 270 > th dose independent rect. 17 12
748 378.09 wind 1.0 720 > th dose independent rect. 5 7
757 378.12 wind 5.0 10 < th dose independent rect. 18 12
763 378.13 precipitation 0.1 720 < th dose independent rect. 24 14
769 378.13 precipitation 0.1 720 < th dose dependent rect. 24 14
771 378.14 humidity 50.0 720 > th dose dependent rect. 19 14
774 378.16 humidity 70.0 720 > th dose independent rect. 19 5
799 378.32 wind 1.0 270 < th dose independent sin 4 NA
804 378.35 wind 1.0 720 > th dose independent rect. 3 9
811 378.38 atmosphere 995.0 4320 > th dose independent rect. 3 3
825 378.46 humidity 50.0 90 > th dose dependent rect. 21 13
827 378.47 wind 1.0 270 > th dose independent rect. 24 13
847 378.56 atmosphere 1005.0 10 > th dose independent rect. 24 6
852 378.58 atmosphere 1005.0 270 > th dose independent rect. 23 5
856 378.59 humidity 90.0 270 > th dose dependent rect. 13 9
868 378.62 precipitation 0.1 720 < th dose independent rect. 2 10
869 378.62 precipitation 0.1 720 < th dose dependent rect. 2 10
872 378.63 atmosphere 1005.0 10 > th dose independent rect. 16 14
926 378.78 humidity 70.0 720 > th dose independent rect. 18 14
929 378.79 radiation 20.0 270 < th dose dependent rect. 6 2
941 378.83 temperature 20.0 90 > th dose independent rect. 5 8
942 378.83 radiation 1.0 270 < th dose independent rect. 4 20
963 378.90 radiation 10.0 270 < th dose dependent rect. 4 21
969 378.93 atmosphere 1005.0 10 < th dose independent rect. 22 10
985 378.96 humidity 50.0 90 > th dose dependent rect. 6 9