BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0225000 Os06g0225000|AY620416
(194 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0225000 Similar to NTGB3 (Fragment) 317 2e-87
Os01g0254000 Similar to NTGB2 (Fragment) 256 5e-69
Os01g0338000 Similar to GTP-binding protein SAR1A 249 8e-67
Os12g0560300 Similar to NTGB2 (Fragment) 246 1e-65
Os08g0248900 Similar to ADP-ribosylation factor 3 69 2e-12
>Os06g0225000 Similar to NTGB3 (Fragment)
Length = 194
Score = 317 bits (813), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 157/194 (80%), Positives = 157/194 (80%)
Query: 1 MSFLLDWFYDVLASIGLWQKEAKILFLGLDNAGKTTLFYMLSQENLAVHQPTQHPTSEEL 60
MSFLLDWFYDVLASIGLWQKEAKILFLGLDNAGKTTLFYMLSQENLAVHQPTQHPTSEEL
Sbjct: 1 MSFLLDWFYDVLASIGLWQKEAKILFLGLDNAGKTTLFYMLSQENLAVHQPTQHPTSEEL 60
Query: 61 SIGRIRFKAFDLGGHRIARRVWRXXXXXXXXXXXXXXXXXRCRFAESKMEXXXXXXXXXX 120
SIGRIRFKAFDLGGHRIARRVWR RCRFAESKME
Sbjct: 61 SIGRIRFKAFDLGGHRIARRVWRDYYAQVDAVVYVVDAADRCRFAESKMELDALLSDDAL 120
Query: 121 XGVPFLVLGNKIDIPYAVPEQELCYYXXXXXXXXXKGNVNLAGTGVRPVEVFMCSVVRRM 180
GVPFLVLGNKIDIPYAVPEQELCYY KGNVNLAGTGVRPVEVFMCSVVRRM
Sbjct: 121 AGVPFLVLGNKIDIPYAVPEQELCYYLGLTGLTTGKGNVNLAGTGVRPVEVFMCSVVRRM 180
Query: 181 GYGDGFRWMSQYIK 194
GYGDGFRWMSQYIK
Sbjct: 181 GYGDGFRWMSQYIK 194
>Os01g0254000 Similar to NTGB2 (Fragment)
Length = 193
Score = 256 bits (655), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 123/192 (64%), Positives = 140/192 (72%)
Query: 3 FLLDWFYDVLASIGLWQKEAKILFLGLDNAGKTTLFYMLSQENLAVHQPTQHPTSEELSI 62
FL+DWFY VLAS+GLWQKEAKILFLGLDNAGKTTL +ML E L HQPTQ+PTSEELSI
Sbjct: 2 FLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI 61
Query: 63 GRIRFKAFDLGGHRIARRVWRXXXXXXXXXXXXXXXXXRCRFAESKMEXXXXXXXXXXXG 122
G+I+FKAFDLGGH+IARRVW+ + RFAESK E
Sbjct: 62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAADKERFAESKKELDALLADDSLAT 121
Query: 123 VPFLVLGNKIDIPYAVPEQELCYYXXXXXXXXXKGNVNLAGTGVRPVEVFMCSVVRRMGY 182
VPFL+LGNKIDIPYA E+EL YY KGNVNLA + VRP+E+FMCSVVR+MGY
Sbjct: 122 VPFLILGNKIDIPYAASEEELRYYLGLSNFTTGKGNVNLADSNVRPLEIFMCSVVRKMGY 181
Query: 183 GDGFRWMSQYIK 194
G+GF+WMSQYIK
Sbjct: 182 GEGFKWMSQYIK 193
>Os01g0338000 Similar to GTP-binding protein SAR1A
Length = 193
Score = 249 bits (636), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 121/192 (63%), Positives = 137/192 (71%)
Query: 3 FLLDWFYDVLASIGLWQKEAKILFLGLDNAGKTTLFYMLSQENLAVHQPTQHPTSEELSI 62
FL DWFY VLAS+GLWQKEAKILFLGLDNAGKTTL +ML E L HQPTQHPTSEELSI
Sbjct: 2 FLWDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI 61
Query: 63 GRIRFKAFDLGGHRIARRVWRXXXXXXXXXXXXXXXXXRCRFAESKMEXXXXXXXXXXXG 122
G+I+FKAFDLGGH+IARRVW+ + RFAESK E
Sbjct: 62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDDSLAA 121
Query: 123 VPFLVLGNKIDIPYAVPEQELCYYXXXXXXXXXKGNVNLAGTGVRPVEVFMCSVVRRMGY 182
VPFL+LGNKIDIPYA E+EL Y+ KG V+L + VRP+EVFMCSVVR+MGY
Sbjct: 122 VPFLILGNKIDIPYAASEEELRYHLGLSNFTTGKGKVSLGESNVRPLEVFMCSVVRKMGY 181
Query: 183 GDGFRWMSQYIK 194
GDGF+W+SQYIK
Sbjct: 182 GDGFKWVSQYIK 193
>Os12g0560300 Similar to NTGB2 (Fragment)
Length = 193
Score = 246 bits (627), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 118/192 (61%), Positives = 138/192 (71%)
Query: 3 FLLDWFYDVLASIGLWQKEAKILFLGLDNAGKTTLFYMLSQENLAVHQPTQHPTSEELSI 62
FL+DWFY VLAS+GLWQKEAKILFLGLDNAGKTTL +ML E L HQPTQ+PTSEELSI
Sbjct: 2 FLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSI 61
Query: 63 GRIRFKAFDLGGHRIARRVWRXXXXXXXXXXXXXXXXXRCRFAESKMEXXXXXXXXXXXG 122
G+I+FKAFDLGGH+IARRVW+ + RF+ESK E
Sbjct: 62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDSLAT 121
Query: 123 VPFLVLGNKIDIPYAVPEQELCYYXXXXXXXXXKGNVNLAGTGVRPVEVFMCSVVRRMGY 182
VPFL+LGNKIDIPYA E+EL Y+ KG V+L + VRP+EVFMCS+VR+MGY
Sbjct: 122 VPFLILGNKIDIPYAASEEELRYHMGLSNFTTGKGRVSLGESNVRPLEVFMCSIVRKMGY 181
Query: 183 GDGFRWMSQYIK 194
GDGF+W+SQYIK
Sbjct: 182 GDGFKWVSQYIK 193
>Os08g0248900 Similar to ADP-ribosylation factor 3
Length = 182
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 69/176 (39%), Gaps = 12/176 (6%)
Query: 19 QKEAKILFLGLDNAGKTTLFYMLSQENLAVHQPTQHPTSEELSIGRIRFKAFDLGGHRIA 78
+EA+IL LGLDNAGKTT+ Y L + PT E + I+F+ +DLGG
Sbjct: 15 NREARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
Query: 79 RRVWRXXXXXXXXXXXXXXXXXRCRFAESKMEXXXXXXXXXXXGVPFLVLGNKIDIPYAV 138
R WR R +K E G LV NK D+P A+
Sbjct: 75 RPYWRCYFPNTQAIIYVVDSSDTDRLVTAKEEFHAILEEDELKGAVVLVYANKQDLPGAL 134
Query: 139 PEQELCYYXXXXXXXXXKGNVNLAGTGVRPVEVFMCSVVRRMGYGDGFRWMSQYIK 194
+ + ++ L R +F S ++ G +G W+S +K
Sbjct: 135 DDAAITE------------SLELHKIKSRQWAIFKTSAIKGEGLFEGLDWLSNALK 178
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.142 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,380,783
Number of extensions: 164019
Number of successful extensions: 430
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 5
Length of query: 194
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 99
Effective length of database: 12,075,471
Effective search space: 1195471629
Effective search space used: 1195471629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 153 (63.5 bits)