Os01g0254000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NTGB2 (Fragment).
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Os01g0254000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NTGB2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.79 | 0.318 | 13.2 | 0.178 | 0.561 | -0.641 | 0.598 | -0.929 | 0.275 | 6.88 | 6.881 | 103 | -- | -- |
| 48.5 | 0.324 | 13.2 | 0.158 | 0.581 | -0.452 | 1.28 | -- | 0.293 | 8.55 | 6.914 | 95 | -- | -- |
| 46.62 | 0.318 | 13.2 | 0.185 | 0.567 | -0.596 | -- | -1.03 | 0.274 | 7.27 | 7.421 | 101 | -- | -- |
| 52.58 | 0.338 | 13.2 | 0.192 | 0.564 | -0.664 | -- | -- | 0.273 | 6.71 | 5.739 | 111 | -- | -- |
| 57.85 | 0.356 | 13.2 | 0.195 | -- | -0.701 | -- | -0.966 | 0.296 | -- | 8.34 | 26 | -- | -- |
| 52.41 | 0.339 | 13.2 | 0.157 | 0.947 | -- | 1.2 | -- | 0.308 | 10.3 | -- | -- | -- | -- |
| 58.25 | 0.357 | 13.2 | 0.205 | 0.942 | -- | -- | -- | 0.31 | 10.3 | -- | -- | -- | -- |
| 63.57 | 0.373 | 13.2 | 0.215 | -- | -0.702 | -- | -- | 0.299 | -- | 8.34 | 26 | -- | -- |
| 53.5 | 0.341 | 13.2 | -- | 0.58 | -0.692 | -- | -- | 0.251 | 6.46 | 5.537 | 116 | -- | -- |
| 112.29 | 0.495 | 13.2 | 0.19 | -- | -- | -- | -- | 0.308 | -- | -- | -- | -- | -- |
| 59.35 | 0.36 | 13.2 | -- | 0.94 | -- | -- | -- | 0.288 | 10.3 | -- | -- | -- | -- |
| 64.78 | 0.376 | 13.2 | -- | -- | -0.7 | -- | -- | 0.275 | -- | 8.34 | 26 | -- | -- |
| 113.24 | 0.497 | 13.2 | -- | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.42 | temperature | 10 | 30 | > th | dose dependent | rect. | 6 | 21 |
| 5 | 43.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 41 | 44.37 | temperature | 25 | 90 | > th | dose independent | rect. | 23 | 12 |
| 44 | 44.41 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 45 | 44.42 | temperature | 10 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 52 | 44.45 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 2 |
| 53 | 44.45 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 61 | 44.49 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 94 | 44.56 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 5 |
| 119 | 44.62 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 133 | 44.64 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 172 | 44.71 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 17 |
| 180 | 44.72 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 207 | 44.75 | temperature | 25 | 90 | > th | dose independent | sin | 6 | NA |
| 208 | 44.75 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 214 | 44.76 | temperature | 25 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 251 | 44.81 | radiation | 1 | 90 | < th | dose independent | sin | 1 | NA |
| 252 | 44.81 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 266 | 44.82 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 269 | 44.82 | temperature | 10 | 14400 | > th | dose dependent | sin | 3 | NA |
| 285 | 44.83 | temperature | 25 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 292 | 44.83 | radiation | 1 | 90 | < th | dose dependent | sin | 1 | NA |
| 331 | 44.85 | temperature | 15 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 344 | 44.86 | radiation | 1 | 90 | > th | dose independent | sin | 1 | NA |
| 345 | 44.86 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 353 | 44.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 407 | 44.89 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 492 | 44.94 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 496 | 44.94 | temperature | 30 | 14400 | < th | dose dependent | sin | 3 | NA |
| 498 | 44.94 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 2 |
| 576 | 44.97 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 581 | 44.97 | temperature | 10 | 90 | > th | dose dependent | rect. | 21 | 14 |
| 653 | 45.00 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 686 | 45.01 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 5 |
| 761 | 45.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 805 | 45.04 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 854 | 45.05 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 856 | 45.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 903 | 45.06 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |