Os12g0560300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NTGB2 (Fragment).
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Os12g0560300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NTGB2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.04 | 0.27 | 12.8 | -1.27 | 1.55 | 0.445 | -0.0739 | -1.06 | 0.267 | 5.44 | 0.3509 | 7277 | -- | -- |
| 33.8 | 0.271 | 12.8 | -1.17 | 1.54 | 0.697 | -0.0781 | -- | 0.254 | 5.64 | 0.3502 | 7146 | -- | -- |
| 32.95 | 0.267 | 12.8 | -1.26 | 1.54 | 0.449 | -- | -1.13 | 0.269 | 5.44 | 0.3559 | 8756 | -- | -- |
| 33.58 | 0.27 | 12.8 | -1.14 | 1.57 | 0.733 | -- | -- | 0.272 | 5.5 | 0.1737 | 8644 | -- | -- |
| 157.68 | 0.585 | 12.9 | -1.26 | -- | 0.564 | -- | -0.893 | 0.242 | -- | 0.8198 | 10063 | -- | -- |
| 40.64 | 0.299 | 12.8 | -0.889 | 1.55 | -- | -0.0557 | -- | 0.41 | 5.49 | -- | -- | -- | -- |
| 40.65 | 0.299 | 12.8 | -0.889 | 1.55 | -- | -- | -- | 0.41 | 5.49 | -- | -- | -- | -- |
| 156.93 | 0.583 | 12.8 | -1.1 | -- | 0.782 | -- | -- | 0.272 | -- | 0.3574 | 8636 | -- | -- |
| 59.53 | 0.359 | 12.8 | -- | 1.61 | 0.422 | -- | -- | 0.387 | 5.43 | 6.98 | 9105 | -- | -- |
| 164.84 | 0.6 | 12.8 | -0.838 | -- | -- | -- | -- | 0.448 | -- | -- | -- | -- | -- |
| 61.47 | 0.367 | 12.8 | -- | 1.53 | -- | -- | -- | 0.509 | 5.51 | -- | -- | -- | -- |
| 179.24 | 0.626 | 12.8 | -- | -- | -0.34 | -- | -- | 0.534 | -- | 39.97 | 47520 | -- | -- |
| 183.35 | 0.632 | 12.8 | -- | -- | -- | -- | -- | 0.541 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.78 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 2 | 30.81 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 3 | 30.83 | wind | 5 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 4 | 30.84 | wind | 5 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 5 | 30.88 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 8 | 30.95 | wind | 7 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 9 | 30.95 | wind | 3 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 12 | 30.99 | wind | 3 | 14400 | > th | dose dependent | rect. | 11 | 3 |
| 14 | 31.01 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 17 | 31.03 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 21 | 31.05 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 22 | 31.06 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 30 | 31.09 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 33 | 31.11 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 41 | 31.15 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 51 | 31.18 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 10 |
| 52 | 31.18 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 10 |
| 62 | 31.21 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 5 |
| 80 | 31.25 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 5 |
| 97 | 31.28 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 121 | 31.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 130 | 31.33 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 6 |
| 172 | 31.38 | wind | 9 | 43200 | < th | dose dependent | sin | 19 | NA |
| 199 | 31.40 | wind | 1 | 43200 | > th | dose dependent | sin | 19 | NA |
| 216 | 31.41 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 6 |
| 365 | 31.52 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 14 |
| 416 | 31.57 | wind | 3 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 417 | 31.57 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 466 | 31.60 | wind | 9 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 486 | 31.61 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 14 |
| 530 | 31.65 | wind | 1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 680 | 31.77 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 684 | 31.77 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 807 | 31.85 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 809 | 31.86 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 841 | 31.88 | wind | 5 | 14400 | < th | dose independent | sin | 0 | NA |
| 888 | 31.91 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 905 | 31.93 | wind | 5 | 14400 | > th | dose independent | sin | 0 | NA |
| 925 | 31.94 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 949 | 31.95 | wind | 3 | 14400 | > th | dose dependent | sin | 0 | NA |
| 989 | 31.97 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 11 |