Os01g0338000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GTP-binding protein SAR1A.
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Os01g0338000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GTP-binding protein SAR1A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.91 | 0.193 | 13.6 | -0.352 | 0.238 | 0.553 | -0.0732 | -1.17 | 0.0162 | 2.05 | 19.33 | 1871 | -- | -- |
| 17.92 | 0.197 | 13.6 | -0.0407 | 0.228 | 0.586 | -0.0977 | -- | 0.0999 | 1.92 | 16.46 | 1950 | -- | -- |
| 16.92 | 0.192 | 13.6 | -0.367 | 0.236 | 0.553 | -- | -1.22 | 0.0101 | 2.02 | 19.76 | 1875 | -- | -- |
| 17.92 | 0.197 | 13.6 | -0.0471 | 0.225 | 0.59 | -- | -- | 0.101 | 2.09 | 16.1 | 1986 | -- | -- |
| 18.13 | 0.198 | 13.6 | -0.352 | -- | 0.626 | -- | -1.24 | 0.011 | -- | 19.81 | 1100 | -- | -- |
| 24.54 | 0.232 | 13.6 | 0.159 | 0.243 | -- | -0.0441 | -- | 0.219 | 1.23 | -- | -- | -- | -- |
| 24.55 | 0.232 | 13.6 | 0.16 | 0.243 | -- | -- | -- | 0.219 | 1.2 | -- | -- | -- | -- |
| 19.22 | 0.204 | 13.6 | -0.0429 | -- | 0.689 | -- | -- | 0.0972 | -- | 16 | 1081 | -- | -- |
| 17.97 | 0.197 | 13.6 | -- | 0.224 | 0.572 | -- | -- | 0.105 | 2.01 | 16.08 | 1980 | -- | -- |
| 28.2 | 0.248 | 13.6 | 0.17 | -- | -- | -- | -- | 0.224 | -- | -- | -- | -- | -- |
| 25.23 | 0.235 | 13.6 | -- | 0.245 | -- | -- | -- | 0.202 | 1.23 | -- | -- | -- | -- |
| 19.26 | 0.204 | 13.6 | -- | -- | 0.668 | -- | -- | 0.105 | -- | 16.14 | 1080 | -- | -- |
| 28.96 | 0.251 | 13.6 | -- | -- | -- | -- | -- | 0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 19 |
| 21 | 15.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 38 | 16.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 44 | 16.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 61 | 16.45 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 69 | 16.50 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 87 | 16.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 95 | 16.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 102 | 16.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 115 | 16.76 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 128 | 16.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 17 |
| 135 | 16.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 141 | 16.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 169 | 16.86 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 193 | 16.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 12 |
| 209 | 16.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 220 | 16.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 293 | 17.00 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 359 | 17.04 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 367 | 17.04 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 399 | 17.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 400 | 17.06 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 444 | 17.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 451 | 17.08 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 519 | 17.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 13 |
| 625 | 17.14 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 657 | 17.15 | radiation | 40 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 716 | 17.17 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 747 | 17.18 | radiation | 1 | 270 | < th | dose independent | rect. | 15 | 11 |
| 772 | 17.19 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 837 | 17.21 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 869 | 17.22 | radiation | 1 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 973 | 17.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |