BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0548300 Os12g0548300|AK070054
(220 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0548300 Similar to Nucleoside diphosphate kinase II, c... 300 5e-82
Os07g0492000 Nucleoside diphosphate kinase I (EC 2.7.4.6) (... 199 1e-51
Os10g0563700 Similar to Nucleoside diphosphate kinase I (EC... 194 6e-50
Os05g0595400 Similar to Nucleoside diphosphate kinase III (... 172 1e-43
Os02g0565100 Nucleoside-diphosphate kinase family protein 75 3e-14
>Os12g0548300 Similar to Nucleoside diphosphate kinase II, chloroplast precursor
(EC 2.7.4.6) (NDK II) (NDP kinase II) (NDPK II)
Length = 220
Score = 300 bits (769), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 156/220 (70%), Positives = 156/220 (70%)
Query: 1 MDAMAVLARTSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSRGRXXXXXXXXXXXXXXX 60
MDAMAVLARTSR GSRGR
Sbjct: 1 MDAMAVLARTSRPAPTLLAATSPAVSRRPAAVSFAAAASPGSRGRVALSAAWGGRAARGR 60
Query: 61 XXXXXXXXXSSVEQSYIMIKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAQEHY 120
SSVEQSYIMIKPDGVQRGLVGEIISRFE QCPKDLAQEHY
Sbjct: 61 VSAAGRIVASSVEQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHY 120
Query: 121 KDLKEKPFFPGLIEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQT 180
KDLKEKPFFPGLIEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQT
Sbjct: 121 KDLKEKPFFPGLIEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQT 180
Query: 181 GRNVVHGSDSPDNGKREIALWFKEGELCEWESVLTPWLVE 220
GRNVVHGSDSPDNGKREIALWFKEGELCEWESVLTPWLVE
Sbjct: 181 GRNVVHGSDSPDNGKREIALWFKEGELCEWESVLTPWLVE 220
>Os07g0492000 Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I) (NDP kinase I)
(NDPK I)
Length = 149
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 94/149 (63%), Positives = 110/149 (73%), Gaps = 1/149 (0%)
Query: 72 VEQSYIMIKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAQEHYKDLKEKPFFPG 131
+EQS+IMIKPDGVQRGL+G+IISRFE + AQ+HY DL +KPFFPG
Sbjct: 1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 60
Query: 132 LIEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSDSP 191
L+EYI SGPVV M WEG VVA+ R++IGAT P +A PGTIR D AV+ GRNV+HGSDS
Sbjct: 61 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 120
Query: 192 DNGKREIALWFKEGELCEWESVLTPWLVE 220
DNGK+EIALWF EG L EW S L PW+ E
Sbjct: 121 DNGKKEIALWFPEG-LAEWRSNLHPWIYE 148
>Os10g0563700 Similar to Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I)
(NDP kinase I) (PP18)
Length = 151
Score = 194 bits (492), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 108/150 (72%), Gaps = 1/150 (0%)
Query: 71 SVEQSYIMIKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAQEHYKDLKEKPFFP 130
++EQ++IMIKPDGVQRGL+GE+I RFE K A++HY DL KPFF
Sbjct: 2 ALEQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFG 61
Query: 131 GLIEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSDS 190
GL+EYI SGPVV M WEG VV++ RKL+GATNPL AEPGTIRGD AV GRNV+HGSDS
Sbjct: 62 GLVEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSDS 121
Query: 191 PDNGKREIALWFKEGELCEWESVLTPWLVE 220
+N ++EIALWF EG + EW S PW+ E
Sbjct: 122 VENARKEIALWFPEG-IAEWRSNQHPWIYE 150
>Os05g0595400 Similar to Nucleoside diphosphate kinase III (EC 2.7.4.6) (NDK III)
(NDP kinase III) (NDPK III)
Length = 239
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 104/149 (69%)
Query: 70 SSVEQSYIMIKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAQEHYKDLKEKPFF 129
+ +E+++I IKPDGVQRGL+ EI+SRFE K+ AQ+HY DLK++PFF
Sbjct: 87 AEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPFF 146
Query: 130 PGLIEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSD 189
GL ++++SGPV+ M WEG GV+ RKLIGAT+P ++EPGTIRGDLAV GRN++HGSD
Sbjct: 147 NGLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 206
Query: 190 SPDNGKREIALWFKEGELCEWESVLTPWL 218
P+ K EI LWF+ EL + S W+
Sbjct: 207 GPETAKAEIGLWFEPRELVSYTSNEEKWI 235
>Os02g0565100 Nucleoside-diphosphate kinase family protein
Length = 181
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 73 EQSYIMIKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAQEHYKDLKEKPFFPGL 132
E++ MIKPDG+ I Q + A Y + + FF L
Sbjct: 36 ERTLAMIKPDGLSGNYTERIKEVILESGFDIVKEAVVQLDAERASLFYAEHSGRSFFDSL 95
Query: 133 IEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAE---PGTIRGDLAVQTGRNVVHGSD 189
++Y+TSGPV+ M E ++ R LIG T+ +A+ P +IR V + +N VHGSD
Sbjct: 96 VKYMTSGPVLVMILERPDAISHWRVLIGPTDARKAKISNPNSIRAMCGVDSEKNCVHGSD 155
Query: 190 SPDNGKREIALWF 202
SP + REI+ +F
Sbjct: 156 SPQSAAREISFFF 168
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,538,772
Number of extensions: 202602
Number of successful extensions: 369
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 5
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)