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Os02g0565100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleoside-diphosphate kinase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.44 (0.0219) R2 : 0.356
β1 : 1.13 (0.0804) R2dD : 0.289 R2D : 0.169
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.466 (0.0469) R2dN8 : 0.187 R2N8 : 0.0671
σ : 0.412
deviance : 77.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.39 0.347 8.54 0.646 0.442 -0.152 0.217 -3.16 0.343 23.4 30.07 1289 -- --
55.84 0.348 8.48 1.3 0.474 -0.453 0.226 -- 0.416 23.2 29.75 1300 -- --
54.6 0.344 8.54 0.645 0.44 -0.153 -- -3.12 0.342 23.5 30.1 1289 -- --
55.42 0.347 8.46 1.29 0.442 -0.513 -- -- 0.421 23.4 29.8 1298 -- --
65.8 0.378 8.53 0.638 -- -0.105 -- -3.06 0.353 -- 30.1 1428 -- --
68.56 0.388 8.45 1.13 0.384 -- 0.108 -- 0.464 22.9 -- -- -- --
68.6 0.388 8.45 1.12 0.383 -- -- -- 0.463 23 -- -- -- --
66.16 0.379 8.44 1.3 -- -0.516 -- -- 0.472 -- 29.5 1541 -- --
96.2 0.457 8.5 -- 0.439 -0.323 -- -- 0.26 23.3 30.8 1251 -- --
77.73 0.412 8.44 1.13 -- -- -- -- 0.466 -- -- -- -- --
101.7 0.472 8.48 -- 0.393 -- -- -- 0.339 23.2 -- -- -- --
106.27 0.48 8.48 -- -- -0.344 -- -- 0.302 -- 31.97 5979 -- --
111.37 0.493 8.47 -- -- -- -- -- 0.341 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.90 precipitation 1e-01 43200 > th dose dependent rect. 16 2
2 51.01 humidity 5e+01 14400 > th dose independent rect. 16 19
3 51.35 wind 9e+00 14400 > th dose dependent rect. 18 4
4 51.36 humidity 6e+01 14400 < th dose independent rect. 17 16
5 51.37 wind 9e+00 14400 > th dose dependent rect. 18 6
13 51.46 precipitation 1e-01 43200 > th dose dependent rect. 17 4
14 51.58 wind 9e+00 14400 < th dose independent rect. 18 3
15 51.66 wind 9e+00 14400 > th dose dependent rect. 18 17
16 51.80 humidity 6e+01 14400 < th dose independent rect. 17 1
17 51.82 wind 9e+00 14400 > th dose independent rect. 18 3
18 51.83 precipitation 1e-01 4320 > th dose dependent rect. 4 14
23 51.94 wind 9e+00 14400 > th dose independent rect. 18 6
26 51.96 precipitation 1e-01 43200 > th dose dependent rect. 20 1
29 52.03 humidity 5e+01 14400 < th dose independent sin 11 NA
30 52.03 precipitation 1e-01 4320 > th dose independent rect. 12 6
31 52.05 precipitation 1e-01 4320 < th dose independent rect. 13 5
34 52.05 precipitation 1e-01 4320 < th dose dependent rect. 13 5
35 52.06 precipitation 1e-01 4320 > th dose dependent rect. 8 11
43 52.12 precipitation 1e-01 4320 > th dose dependent rect. 12 7
49 52.16 precipitation 1e-01 4320 < th dose independent rect. 16 3
50 52.16 precipitation 1e-01 4320 < th dose dependent rect. 16 3
54 52.21 wind 9e+00 14400 < th dose independent rect. 18 9
57 52.24 humidity 6e+01 14400 < th dose dependent rect. 17 16
61 52.27 humidity 7e+01 4320 > th dose independent rect. 18 6
62 52.27 precipitation 1e-01 14400 > th dose dependent rect. 17 6
67 52.29 humidity 7e+01 4320 > th dose independent rect. 18 10
69 52.30 humidity 7e+01 4320 > th dose independent rect. 18 2
76 52.31 precipitation 1e-01 4320 > th dose independent rect. 16 3
79 52.32 precipitation 1e-01 4320 > th dose independent rect. 8 10
82 52.33 precipitation 1e-01 43200 < th dose independent rect. 17 1
93 52.33 precipitation 1e-01 43200 < th dose dependent rect. 17 1
101 52.37 precipitation 1e-01 4320 < th dose independent rect. 8 10
102 52.37 precipitation 1e-01 4320 < th dose dependent rect. 8 10
105 52.38 humidity 8e+01 4320 < th dose dependent rect. 18 1
107 52.39 humidity 5e+01 14400 > th dose independent rect. 17 17
110 52.41 wind 9e+00 14400 < th dose independent rect. 20 1
111 52.44 precipitation 1e-01 43200 > th dose independent rect. 17 1
123 52.52 wind 9e+00 14400 > th dose independent rect. 20 5
129 52.54 humidity 5e+01 14400 < th dose independent rect. 15 20
130 52.55 wind 5e+00 14400 > th dose dependent rect. 20 1
134 52.57 humidity 6e+01 14400 < th dose dependent rect. 16 18
150 52.60 wind 9e+00 14400 > th dose dependent rect. 20 4
152 52.61 humidity 5e+01 14400 < th dose independent rect. 15 3
229 52.81 humidity 6e+01 4320 < th dose independent rect. 12 1
231 52.83 atmosphere 1e+03 14400 < th dose independent rect. 10 1
232 52.84 atmosphere 1e+03 14400 > th dose independent rect. 10 1
248 52.90 atmosphere 1e+03 43200 > th dose independent rect. 22 1
251 52.91 atmosphere 1e+03 43200 < th dose independent rect. 22 1
273 52.95 wind 9e+00 14400 < th dose independent rect. 18 17
287 53.00 wind 9e+00 43200 > th dose dependent sin 14 NA
300 53.04 wind 9e+00 14400 < th dose independent rect. 20 7
328 53.11 wind 9e+00 14400 > th dose independent rect. 18 17
334 53.14 wind 9e+00 14400 > th dose dependent rect. 20 15
359 53.24 humidity 6e+01 4320 > th dose independent rect. 12 1
420 53.42 precipitation 1e-01 14400 < th dose independent rect. 17 5
423 53.42 precipitation 1e-01 14400 < th dose dependent rect. 17 5
424 53.42 radiation 1e+00 43200 < th dose dependent rect. 20 7
428 53.44 precipitation 1e-01 14400 > th dose independent rect. 17 5
442 53.46 humidity 5e+01 14400 > th dose independent sin 11 NA
490 53.54 atmosphere 1e+03 14400 < th dose dependent rect. 10 1
496 53.55 humidity 6e+01 14400 < th dose dependent rect. 17 1
502 53.56 wind 9e+00 43200 > th dose dependent rect. 13 19
507 53.57 humidity 5e+01 4320 > th dose dependent rect. 18 1
554 53.64 wind 7e+00 43200 > th dose dependent rect. 13 1
577 53.68 wind 7e+00 43200 > th dose independent rect. 13 1
592 53.70 atmosphere 1e+03 14400 < th dose independent sin 2 NA
608 53.72 wind 9e+00 43200 > th dose dependent rect. 15 16
609 53.73 atmosphere 1e+03 14400 > th dose independent sin 3 NA
611 53.73 radiation 2e+01 43200 > th dose independent rect. 11 1
663 53.80 radiation 1e+00 43200 < th dose dependent rect. 22 5
699 53.85 atmosphere 1e+03 14400 < th dose independent rect. 6 14
701 53.85 atmosphere 1e+03 14400 < th dose independent rect. 4 16
763 53.89 atmosphere 1e+03 14400 > th dose independent rect. 4 16
767 53.90 atmosphere 1e+03 14400 > th dose independent rect. 4 1
872 53.97 wind 9e+00 14400 < th dose independent rect. 18 15
903 53.99 radiation 1e+01 43200 > th dose independent rect. 7 6
911 54.00 wind 7e+00 43200 < th dose independent rect. 13 1
917 54.00 humidity 9e+01 14400 > th dose dependent rect. 21 1
938 54.02 atmosphere 1e+03 14400 < th dose independent rect. 19 19
970 54.04 atmosphere 1e+03 14400 > th dose independent rect. 19 1
984 54.05 atmosphere 1e+03 14400 > th dose independent rect. 19 18