BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0565100 Os02g0565100|AK106382
(181 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G17410.1 | chr1:5968627-5969780 REVERSE LENGTH=182 216 5e-57
AT5G63310.1 | chr5:25372122-25373838 REVERSE LENGTH=232 92 1e-19
AT4G11010.1 | chr4:6732780-6734298 REVERSE LENGTH=239 89 1e-18
AT4G23900.1 | chr4:12424505-12426318 FORWARD LENGTH=238 86 1e-17
AT4G09320.1 | chr4:5923424-5924366 FORWARD LENGTH=170 83 7e-17
>AT1G17410.1 | chr1:5968627-5969780 REVERSE LENGTH=182
Length = 181
Score = 216 bits (550), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 106/158 (67%), Positives = 123/158 (77%), Gaps = 3/158 (1%)
Query: 27 CWSCVAIERERTLAMIKPDGLSGNYTERIKEVILESGFDIVKEAVVQLDAERASLFYAEH 86
C A ERTLAMIKPDG+SGNYTE IK +++E+GF+IVKE + QLD E AS FY EH
Sbjct: 24 CLGYGASSEERTLAMIKPDGVSGNYTEEIKTIVVEAGFNIVKEMLTQLDKETASAFYEEH 83
Query: 87 SGRSFFDSLVKYMTSGPVLVMILERPDAISHWRVLIGPTDARKAKISNPNSIRAMCGVDS 146
S RSFF LV YMTSGPVLVM+LE+ +A+S WR LIGPTDA KAKIS+P+SIRA+CG +S
Sbjct: 84 SSRSFFPHLVTYMTSGPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHPHSIRALCGKNS 143
Query: 147 EKNCVHGSDSPQSAAREISFFFGDVRSD---TVEHDEL 181
+KNCVHGSDS SA REI FFF DV S T +HDEL
Sbjct: 144 QKNCVHGSDSTSSAEREIKFFFKDVVSGDIATQQHDEL 181
>AT5G63310.1 | chr5:25372122-25373838 REVERSE LENGTH=232
Length = 231
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Query: 36 ERTLAMIKPDGLSGNYTERIKEVILESGFDIVKEAVVQLDAERASLFYAEHSGRSFFDSL 95
E T M+KPDG+ I + GF ++ + Q E A Y + S +SFF +L
Sbjct: 84 EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNL 143
Query: 96 VKYMTSGPVLVMILERPDAISHWRVLIGPTDARKAKISNPNSIRAMCGVDSEKNCVHGSD 155
++Y+TSGPV+ M E ++ R LIG TD +A+ P +IR V + +N VHGSD
Sbjct: 144 IEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAE---PGTIRGDLAVQTGRNIVHGSD 200
Query: 156 SPQSAAREISFFFGD 170
SP++ REI +F +
Sbjct: 201 SPENGKREIGLWFKE 215
>AT4G11010.1 | chr4:6732780-6734298 REVERSE LENGTH=239
Length = 238
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 30 CVAIERERTLAMIKPDGLSGNYTERIKEVILESGFDIVKEAVVQLDAERASLFYAEHSGR 89
+A E ERT IKPDG+ I GF +V V+ + A Y + R
Sbjct: 83 VLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKER 142
Query: 90 SFFDSLVKYMTSGPVLVMILERPDAISHWRVLIGPTDARKAKISNPNSIRAMCGVDSEKN 149
FF+ L +++SGPV+ M+ E I + R LIG TD +K S P +IR V +N
Sbjct: 143 PFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQK---SEPGTIRGDLAVTVGRN 199
Query: 150 CVHGSDSPQSAAREISFFF 168
+HGSD P++A EIS +F
Sbjct: 200 IIHGSDGPETAKDEISLWF 218
>AT4G23900.1 | chr4:12424505-12426318 FORWARD LENGTH=238
Length = 237
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 30 CVAIERERTLAMIKPDGLSGNYTERIKEVILESGFDIVKEAVVQLDAERASLFYAEHSGR 89
+A E ERT IKPDG+ I G+ +V V+ A Y + R
Sbjct: 82 ALAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKER 141
Query: 90 SFFDSLVKYMTSGPVLVMILERPDAISHWRVLIGPTDARKAKISNPNSIRAMCGVDSEKN 149
FF+ L +++SGPV+ M+ E I + R LIG TD +K S P +IR V +N
Sbjct: 142 PFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQK---SEPGTIRGDLAVVVGRN 198
Query: 150 CVHGSDSPQSAAREISFFF 168
+HGSD P++A EIS +F
Sbjct: 199 IIHGSDGPETAKDEISLWF 217
>AT4G09320.1 | chr4:5923424-5924366 FORWARD LENGTH=170
Length = 169
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 36 ERTLAMIKPDGLSGNYTERIKEVILESGFDIVKEAVVQLDAERASLFYAEHSGRSFFDSL 95
E+T MIKPDG+ + + GF + ++ ++ A Y + S +SFF L
Sbjct: 22 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 81
Query: 96 VKYMTSGPVLVMILERPDAISHWRVLIGPTDARKAKISNPNSIRAMCGVDSEKNCVHGSD 155
V Y+ SGPV+ MI E + + R +IG T+ S P +IR +D +N +HGSD
Sbjct: 82 VDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAA---SEPGTIRGDFAIDIGRNVIHGSD 138
Query: 156 SPQSAAREISFFFGD 170
S +SA +EI+ +F D
Sbjct: 139 SVESARKEIALWFPD 153
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,541,800
Number of extensions: 126816
Number of successful extensions: 325
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 5
Length of query: 181
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 89
Effective length of database: 8,584,297
Effective search space: 764002433
Effective search space used: 764002433
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)