BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0565100 Os02g0565100|AK106382
(181 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0565100 Nucleoside-diphosphate kinase family protein 337 3e-93
AK119750 122 1e-28
Os05g0595400 Similar to Nucleoside diphosphate kinase III (... 89 1e-18
Os10g0563700 Similar to Nucleoside diphosphate kinase I (EC... 85 3e-17
Os12g0548300 Similar to Nucleoside diphosphate kinase II, c... 82 2e-16
Os07g0492000 Nucleoside diphosphate kinase I (EC 2.7.4.6) (... 79 2e-15
>Os02g0565100 Nucleoside-diphosphate kinase family protein
Length = 181
Score = 337 bits (863), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 166/181 (91%), Positives = 166/181 (91%)
Query: 1 MGGATSPAAXXXXXXXXXXXXXXXHGCWSCVAIERERTLAMIKPDGLSGNYTERIKEVIL 60
MGGATSPAA HGCWSCVAIERERTLAMIKPDGLSGNYTERIKEVIL
Sbjct: 1 MGGATSPAAPCLSVCLLPLLFLFLHGCWSCVAIERERTLAMIKPDGLSGNYTERIKEVIL 60
Query: 61 ESGFDIVKEAVVQLDAERASLFYAEHSGRSFFDSLVKYMTSGPVLVMILERPDAISHWRV 120
ESGFDIVKEAVVQLDAERASLFYAEHSGRSFFDSLVKYMTSGPVLVMILERPDAISHWRV
Sbjct: 61 ESGFDIVKEAVVQLDAERASLFYAEHSGRSFFDSLVKYMTSGPVLVMILERPDAISHWRV 120
Query: 121 LIGPTDARKAKISNPNSIRAMCGVDSEKNCVHGSDSPQSAAREISFFFGDVRSDTVEHDE 180
LIGPTDARKAKISNPNSIRAMCGVDSEKNCVHGSDSPQSAAREISFFFGDVRSDTVEHDE
Sbjct: 121 LIGPTDARKAKISNPNSIRAMCGVDSEKNCVHGSDSPQSAAREISFFFGDVRSDTVEHDE 180
Query: 181 L 181
L
Sbjct: 181 L 181
>AK119750
Length = 1213
Score = 122 bits (306), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/142 (42%), Positives = 90/142 (63%), Gaps = 1/142 (0%)
Query: 36 ERTLAMIKPDGLSGNYTERIKEVILES-GFDIVKEAVVQLDAERASLFYAEHSGRSFFDS 94
+RTLA+IKPD ++ T+ I V+ E GF ++ +L RA FYAEH G+ FF+S
Sbjct: 710 QRTLAIIKPDAVAAGSTDAILSVVTEQYGFAVLATERTRLSKPRAEQFYAEHQGKPFFNS 769
Query: 95 LVKYMTSGPVLVMILERPDAISHWRVLIGPTDARKAKISNPNSIRAMCGVDSEKNCVHGS 154
LV +M+SGP++ + L +P AI+ WR LIGPT +A P+S+RA G +N HGS
Sbjct: 770 LVDFMSSGPIVALCLAKPAAITSWRKLIGPTRRHEALSKKPHSLRARFGHSDTQNACHGS 829
Query: 155 DSPQSAAREISFFFGDVRSDTV 176
+ ++A REI FFF + ++++
Sbjct: 830 EHDKAAEREIQFFFPQLPAESL 851
>Os05g0595400 Similar to Nucleoside diphosphate kinase III (EC 2.7.4.6) (NDK III)
(NDP kinase III) (NDPK III)
Length = 239
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 32 AIERERTLAMIKPDGLSGNYTERIKEVILESGFDIVKEAVVQLDAERASLFYAEHSGRSF 91
A E ERT IKPDG+ I GF +V +V E A Y + R F
Sbjct: 86 AAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPF 145
Query: 92 FDSLVKYMTSGPVLVMILERPDAISHWRVLIGPTDARKAKISNPNSIRAMCGVDSEKNCV 151
F+ L +++SGPVL M+ E I + R LIG TD +K S P +IR V +N +
Sbjct: 146 FNGLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQK---SEPGTIRGDLAVVVGRNII 202
Query: 152 HGSDSPQSAAREISFFF 168
HGSD P++A EI +F
Sbjct: 203 HGSDGPETAKAEIGLWF 219
>Os10g0563700 Similar to Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I)
(NDP kinase I) (PP18)
Length = 151
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Query: 36 ERTLAMIKPDGLSGNYTERIKEVILESGFDIVKEAVVQLDAERASLFYAEHSGRSFFDSL 95
E+T MIKPDG+ + + GF + ++ ++ A YA+ S + FF L
Sbjct: 4 EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGL 63
Query: 96 VKYMTSGPVLVMILERPDAISHWRVLIGPTDARKAKISNPNSIRAMCGVDSEKNCVHGSD 155
V+Y+ SGPV+ M+ E +S R L+G T+ A+ P +IR VD +N +HGSD
Sbjct: 64 VEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAE---PGTIRGDFAVDIGRNVIHGSD 120
Query: 156 SPQSAAREISFFF 168
S ++A +EI+ +F
Sbjct: 121 SVENARKEIALWF 133
>Os12g0548300 Similar to Nucleoside diphosphate kinase II, chloroplast precursor
(EC 2.7.4.6) (NDK II) (NDP kinase II) (NDPK II)
Length = 220
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 31 VAIERERTLAMIKPDGLSGNYTERIKEVILESGFDIVKEAVVQLDAERASLFYAEHSGRS 90
VA E++ MIKPDG+ I + GF + + Q + A Y + +
Sbjct: 68 VASSVEQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKP 127
Query: 91 FFDSLVKYMTSGPVLVMILERPDAISHWRVLIGPTDARKAKISNPNSIRAMCGVDSEKNC 150
FF L++Y+TSGPV+ M E ++ R LIG T+ +A+ P +IR V + +N
Sbjct: 128 FFPGLIEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAE---PGTIRGDLAVQTGRNV 184
Query: 151 VHGSDSPQSAAREISFFF 168
VHGSDSP + REI+ +F
Sbjct: 185 VHGSDSPDNGKREIALWF 202
>Os07g0492000 Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I) (NDP kinase I)
(NDPK I)
Length = 149
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 36 ERTLAMIKPDGLSGNYTERIKEVILESGFDIVKEAVVQLDAERASLFYAEHSGRSFFDSL 95
E++ MIKPDG+ I + GF + + ++ A YA+ S + FF L
Sbjct: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 61
Query: 96 VKYMTSGPVLVMILERPDAISHWRVLIGPTDARKAKISNPNSIRAMCGVDSEKNCVHGSD 155
V+Y+ SGPV+ M+ E D ++ R +IG T +A P +IRA V+ +N +HGSD
Sbjct: 62 VEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAA---PGTIRADYAVEVGRNVIHGSD 118
Query: 156 SPQSAAREISFFF 168
S + +EI+ +F
Sbjct: 119 SVDNGKKEIALWF 131
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,616,870
Number of extensions: 196528
Number of successful extensions: 492
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 487
Number of HSP's successfully gapped: 6
Length of query: 181
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 86
Effective length of database: 12,075,471
Effective search space: 1038490506
Effective search space used: 1038490506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)