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Os05g0595400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nucleoside diphosphate kinase III (EC 2.7.4.6) (NDK III) (NDP kinase III) (NDPK III).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.6 (0.0159) R2 : 0.662
β1 : -1.53 (0.0581) R2dD : 0.533 R2D : 0.307
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.64 (0.0339) R2dN8 : 0.355 R2N8 : 0.129
σ : 0.298
deviance : 40.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.28 0.239 13.6 -1.39 0.433 -0.45 -0.3 0.299 -0.673 20.8 10 4320 -- --
26.4 0.239 13.6 -1.39 0.433 -0.45 -0.3 -- -0.673 20.8 10 4320 -- --
26.58 0.24 13.6 -1.39 0.433 -0.45 -- 0.304 -0.673 20.8 10 4321 -- --
26.71 0.241 13.6 -1.39 0.433 -0.45 -- -- -0.673 20.8 10 4321 -- --
33.81 0.271 13.6 -1.49 -- -0.595 -- 0.332 -0.742 -- 16.6 5234 -- --
29.53 0.255 13.6 -1.54 0.435 -- -0.288 -- -0.637 20.8 -- -- -- --
29.8 0.256 13.6 -1.53 0.434 -- -- -- -0.637 21 -- -- -- --
31.61 0.262 13.6 -1.46 -- -0.582 -- -- -0.64 -- 3.604 2439 -- --
67.48 0.383 13.6 -- 0.476 -0.66 -- -- -0.731 22.3 9.897 47520 -- --
40.61 0.298 13.6 -1.53 -- -- -- -- -0.64 -- -- -- -- --
91.42 0.447 13.6 -- 0.438 -- -- -- -0.467 20.7 -- -- -- --
64.25 0.373 13.5 -- -- -1.19 -- -- -0.515 -- 9.47 47520 -- --
102.25 0.472 13.5 -- -- -- -- -- -0.47 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.30 wind 1.0 43200 > th dose independent rect. 4 4
2 22.30 wind 1.0 43200 < th dose dependent rect. 4 3
3 22.31 wind 1.0 43200 < th dose independent rect. 4 4
6 22.78 wind 1.0 43200 < th dose dependent rect. 2 6
28 23.45 wind 1.0 43200 > th dose independent rect. 23 9
29 23.45 wind 1.0 43200 < th dose independent rect. 23 9
100 24.41 humidity 80.0 43200 > th dose independent rect. 6 1
101 24.41 wind 1.0 43200 > th dose dependent rect. 5 1
105 24.43 humidity 80.0 43200 < th dose independent rect. 6 1
120 24.52 precipitation 0.1 43200 > th dose dependent rect. 18 2
125 24.56 wind 1.0 43200 < th dose dependent rect. 23 9
138 24.66 wind 1.0 43200 < th dose independent sin 8 NA
163 24.82 precipitation 0.1 43200 > th dose dependent rect. 16 1
167 24.84 wind 1.0 43200 > th dose independent sin 8 NA
186 24.93 wind 9.0 43200 < th dose dependent rect. 7 1
187 24.93 wind 1.0 43200 < th dose dependent rect. 2 19
202 24.99 precipitation 0.1 43200 > th dose independent rect. 16 1
211 25.01 precipitation 0.1 43200 > th dose independent rect. 16 4
213 25.02 precipitation 0.1 43200 < th dose independent rect. 16 1
215 25.02 precipitation 0.1 43200 < th dose dependent rect. 16 1
222 25.04 precipitation 0.1 43200 < th dose independent rect. 16 4
224 25.04 precipitation 0.1 43200 < th dose dependent rect. 16 4
232 25.08 radiation 20.0 43200 > th dose independent rect. 9 1
233 25.08 radiation 10.0 43200 > th dose independent rect. 17 17
236 25.10 radiation 20.0 43200 > th dose independent rect. 9 3
237 25.10 radiation 10.0 43200 > th dose independent rect. 6 4
240 25.11 radiation 10.0 43200 > th dose independent sin 10 NA
242 25.11 precipitation 0.1 43200 > th dose independent rect. 18 2
262 25.13 precipitation 0.1 43200 < th dose independent rect. 18 2
268 25.13 precipitation 0.1 43200 < th dose dependent rect. 18 2
276 25.15 humidity 80.0 4320 < th dose independent rect. 9 1
280 25.16 humidity 80.0 4320 > th dose independent rect. 9 1
284 25.16 wind 1.0 43200 < th dose dependent rect. 13 12
314 25.21 wind 1.0 43200 > th dose dependent rect. 7 1
318 25.22 wind 3.0 14400 > th dose dependent rect. 14 1
319 25.22 radiation 20.0 43200 < th dose dependent rect. 9 1
336 25.26 humidity 80.0 4320 > th dose independent rect. 21 14
350 25.28 humidity 80.0 4320 < th dose independent rect. 20 15
355 25.29 wind 9.0 43200 < th dose independent rect. 18 1
377 25.32 humidity 80.0 43200 > th dose independent rect. 20 1
384 25.32 humidity 60.0 43200 > th dose dependent rect. 18 3
388 25.33 wind 5.0 14400 > th dose independent rect. 14 1
395 25.34 wind 5.0 14400 < th dose independent rect. 14 1
411 25.34 wind 9.0 43200 > th dose dependent rect. 18 1
419 25.35 humidity 60.0 43200 > th dose dependent rect. 19 1
432 25.37 wind 9.0 14400 < th dose dependent rect. 14 1
459 25.39 wind 1.0 43200 < th dose dependent sin 6 NA
460 25.39 humidity 60.0 43200 < th dose dependent rect. 14 2
462 25.39 humidity 60.0 43200 > th dose dependent rect. 17 5
463 25.40 wind 9.0 43200 > th dose independent rect. 18 1
506 25.43 wind 5.0 14400 < th dose independent rect. 16 1
532 25.44 precipitation 0.1 43200 > th dose dependent rect. 13 7
558 25.46 radiation 10.0 14400 < th dose independent rect. 13 1
565 25.46 humidity 80.0 14400 < th dose dependent rect. 19 2
570 25.46 humidity 50.0 43200 > th dose dependent rect. 8 15
576 25.47 humidity 70.0 43200 > th dose independent rect. 9 8
603 25.48 wind 5.0 14400 > th dose independent rect. 16 1
604 25.48 humidity 70.0 43200 > th dose independent rect. 9 10
608 25.48 wind 7.0 43200 < th dose dependent rect. 22 10
612 25.49 radiation 10.0 4320 < th dose independent rect. 8 3
613 25.49 radiation 20.0 14400 < th dose independent rect. 2 6
626 25.50 radiation 20.0 14400 < th dose independent rect. 5 3
627 25.50 humidity 70.0 43200 > th dose independent rect. 10 4
641 25.50 radiation 20.0 14400 < th dose independent rect. 18 14
655 25.50 humidity 60.0 43200 < th dose dependent rect. 13 20
659 25.51 humidity 70.0 43200 > th dose independent rect. 13 7
687 25.52 humidity 50.0 43200 > th dose dependent sin 20 NA
699 25.53 humidity 70.0 43200 > th dose independent rect. 18 1
700 25.53 radiation 20.0 43200 > th dose independent rect. 13 1
704 25.53 humidity 70.0 43200 < th dose independent rect. 10 7
708 25.53 wind 1.0 43200 < th dose independent rect. 16 10
720 25.54 radiation 20.0 43200 > th dose independent sin 3 NA
724 25.54 wind 5.0 14400 < th dose independent rect. 14 3
772 25.54 humidity 50.0 43200 > th dose dependent rect. 8 3
791 25.55 wind 1.0 43200 > th dose independent rect. 16 9
800 25.55 humidity 50.0 43200 > th dose dependent rect. 14 8
812 25.56 wind 5.0 14400 > th dose independent rect. 14 3
814 25.56 humidity 70.0 43200 > th dose independent rect. 17 3
853 25.57 wind 1.0 43200 < th dose independent rect. 14 11
870 25.57 humidity 90.0 43200 < th dose dependent rect. 9 2
885 25.58 humidity 70.0 43200 < th dose independent rect. 11 3
907 25.58 humidity 60.0 43200 > th dose independent rect. 14 20
936 25.59 wind 1.0 43200 > th dose independent rect. 14 11
965 25.60 humidity 70.0 43200 > th dose independent rect. 11 2
967 25.60 humidity 70.0 43200 < th dose independent rect. 17 3
979 25.60 radiation 10.0 43200 > th dose independent rect. 13 22
988 25.60 humidity 60.0 43200 < th dose dependent rect. 13 13