BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0595400 Os05g0595400|AK066391
(239 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G11010.1 | chr4:6732780-6734298 REVERSE LENGTH=239 311 3e-85
AT4G23900.1 | chr4:12424505-12426318 FORWARD LENGTH=238 308 1e-84
AT4G09320.1 | chr4:5923424-5924366 FORWARD LENGTH=170 190 6e-49
AT5G63310.1 | chr5:25372122-25373838 REVERSE LENGTH=232 185 1e-47
AT1G17410.1 | chr1:5968627-5969780 REVERSE LENGTH=182 88 5e-18
>AT4G11010.1 | chr4:6732780-6734298 REVERSE LENGTH=239
Length = 238
Score = 311 bits (796), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 143/164 (87%), Positives = 155/164 (94%)
Query: 76 VYMLQDQEAHAAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQK 135
YM+QDQE AAEMERTFIAIKPDGVQRGLISEI+SRFERKGFKLV IK++VPSK+FAQK
Sbjct: 75 AYMIQDQEVLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQK 134
Query: 136 HYHDLKDRPFFNGLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAV 195
HYHDLK+RPFFNGLCDFLSSGPV+AMVWEG+GVI+YGRKLIGATDPQKSEPGTIRGDLAV
Sbjct: 135 HYHDLKERPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAV 194
Query: 196 VVGRNIIHGSDGPETAKAEIGLWFEPRELVSYTSNEEKWIYGVN 239
VGRNIIHGSDGPETAK EI LWF+P+ELVSYTSN EKW+YG N
Sbjct: 195 TVGRNIIHGSDGPETAKDEISLWFKPQELVSYTSNSEKWLYGDN 238
>AT4G23900.1 | chr4:12424505-12426318 FORWARD LENGTH=238
Length = 237
Score = 308 bits (790), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 144/163 (88%), Positives = 155/163 (95%)
Query: 77 YMLQDQEAHAAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKH 136
+MLQDQEA AAEMERTFIAIKPDGVQRGLISEI++RFERKG+KLV IK++VPSK FAQKH
Sbjct: 75 FMLQDQEALAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKH 134
Query: 137 YHDLKDRPFFNGLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVV 196
YHDLK+RPFFNGLC+FLSSGPV+AMVWEGEGVI+YGRKLIGATDPQKSEPGTIRGDLAVV
Sbjct: 135 YHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVV 194
Query: 197 VGRNIIHGSDGPETAKAEIGLWFEPRELVSYTSNEEKWIYGVN 239
VGRNIIHGSDGPETAK EI LWF+P ELVSYTSN EKWIYG N
Sbjct: 195 VGRNIIHGSDGPETAKDEISLWFKPEELVSYTSNAEKWIYGQN 237
>AT4G09320.1 | chr4:5923424-5924366 FORWARD LENGTH=170
Length = 169
Score = 190 bits (482), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 87/161 (54%), Positives = 118/161 (73%), Gaps = 1/161 (0%)
Query: 76 VYMLQDQEAHAAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQK 135
++ L ++ ME+TFI IKPDGVQRGLI E++ RFE+KGF L +KL+ + FA+K
Sbjct: 8 LFCLLRITSNKKTMEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEK 67
Query: 136 HYHDLKDRPFFNGLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAV 195
HY DL + FF+GL D++ SGPV+AM+WEG+ V+ GRK+IGAT+P SEPGTIRGD A+
Sbjct: 68 HYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAI 127
Query: 196 VVGRNIIHGSDGPETAKAEIGLWFEPRELVSYTSNEEKWIY 236
+GRN+IHGSD E+A+ EI LWF P V++ S+ W+Y
Sbjct: 128 DIGRNVIHGSDSVESARKEIALWF-PDGPVNWQSSVHPWVY 167
>AT5G63310.1 | chr5:25372122-25373838 REVERSE LENGTH=232
Length = 231
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 110/152 (72%)
Query: 84 AHAAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDR 143
A ++E T+I +KPDG+QRGL+ EI+SRFE+KGFKL+ +K+ KE A++HY DL +
Sbjct: 78 ASMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAK 137
Query: 144 PFFNGLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIH 203
FF L ++++SGPV+ M WEG GV+ RKLIG TDP ++EPGTIRGDLAV GRNI+H
Sbjct: 138 SFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVH 197
Query: 204 GSDGPETAKAEIGLWFEPRELVSYTSNEEKWI 235
GSD PE K EIGLWF+ EL + S W+
Sbjct: 198 GSDSPENGKREIGLWFKEGELCKWDSALATWL 229
>AT1G17410.1 | chr1:5968627-5969780 REVERSE LENGTH=182
Length = 181
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 86 AAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPF 145
A+ ERT IKPDGV EI + GF +V L KE A Y + R F
Sbjct: 29 ASSEERTLAMIKPDGVSGNYTEEIKTIVVEAGFNIVKEMLTQLDKETASAFYEEHSSRSF 88
Query: 146 FNGLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQK---SEPGTIRGDLAVVVGRNII 202
F L +++SGPVL MV E + R LIG TD +K S P +IR +N +
Sbjct: 89 FPHLVTYMTSGPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHPHSIRALCGKNSQKNCV 148
Query: 203 HGSDGPETAKAEIGLWFE 220
HGSD +A+ EI +F+
Sbjct: 149 HGSDSTSSAEREIKFFFK 166
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,120,886
Number of extensions: 155403
Number of successful extensions: 304
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 5
Length of query: 239
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 143
Effective length of database: 8,474,633
Effective search space: 1211872519
Effective search space used: 1211872519
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)