Os10g0563700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I) (NDP kinase I) (PP18).
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Os10g0563700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I) (NDP kinase I) (PP18).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.48 | 0.464 | 11.9 | -0.176 | 0.616 | 1.16 | 0.723 | -0.641 | -0.266 | 20.1 | 10.02 | 89 | -- | -- |
| 97.84 | 0.461 | 11.9 | -0.0918 | 0.613 | 1.15 | 0.706 | -- | -0.256 | 20.1 | 12.4 | 90 | -- | -- |
| 99.03 | 0.463 | 11.9 | -0.215 | 0.619 | 1.18 | -- | -0.721 | -0.274 | 20.1 | 10.39 | 84 | -- | -- |
| 99.47 | 0.465 | 11.9 | -0.112 | 0.61 | 1.18 | -- | -- | -0.245 | 20.2 | 12.37 | 89 | -- | -- |
| 110.79 | 0.49 | 11.9 | -0.291 | -- | 1.48 | -- | -0.573 | -0.325 | -- | 1.349 | 395 | -- | -- |
| 111.06 | 0.494 | 11.9 | 0.142 | 0.759 | -- | 0.891 | -- | -0.0828 | 18.6 | -- | -- | -- | -- |
| 113.04 | 0.498 | 11.9 | 0.129 | 0.763 | -- | -- | -- | -0.0798 | 18.5 | -- | -- | -- | -- |
| 111.02 | 0.491 | 11.9 | -0.198 | -- | 1.47 | -- | -- | -0.3 | -- | 10.39 | 395 | -- | -- |
| 99.77 | 0.465 | 11.9 | -- | 0.615 | 1.12 | -- | -- | -0.226 | 20.1 | 12.24 | 89 | -- | -- |
| 143.36 | 0.559 | 11.9 | 0.11 | -- | -- | -- | -- | -0.0957 | -- | -- | -- | -- | -- |
| 113.47 | 0.498 | 11.9 | -- | 0.762 | -- | -- | -- | -0.0942 | 18.5 | -- | -- | -- | -- |
| 111.98 | 0.493 | 11.9 | -- | -- | 1.4 | -- | -- | -0.27 | -- | 9.575 | 392 | -- | -- |
| 143.68 | 0.559 | 11.9 | -- | -- | -- | -- | -- | -0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.71 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 4 | 91.90 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 5 | 91.93 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 7 | 92.04 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 24 | 20 |
| 12 | 92.09 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 24 | 20 |
| 33 | 92.31 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 46 | 92.39 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 17 |
| 47 | 92.39 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 21 |
| 52 | 92.41 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 68 | 92.47 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 11 | 10 |
| 86 | 92.54 | humidity | 80.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 101 | 92.58 | humidity | 80.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 103 | 92.59 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 21 |
| 107 | 92.60 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 17 |
| 130 | 92.66 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 133 | 92.66 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 143 | 92.69 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 163 | 92.73 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 17 |
| 199 | 92.79 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 14 |
| 266 | 92.87 | humidity | 70.0 | 14400 | > th | dose dependent | sin | 16 | NA |
| 283 | 92.89 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 6 | 21 |
| 288 | 92.89 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 21 | 22 |
| 294 | 92.90 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 24 | 19 |
| 297 | 92.90 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 17 | 22 |
| 298 | 92.90 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 24 | 22 |
| 360 | 92.95 | humidity | 70.0 | 14400 | > th | dose dependent | no | NA | NA |
| 377 | 92.96 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 19 |
| 380 | 92.96 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 384 | 92.97 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 6 | 21 |
| 388 | 92.97 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 483 | 93.06 | humidity | 80.0 | 14400 | < th | dose independent | no | NA | NA |
| 519 | 93.09 | humidity | 80.0 | 14400 | > th | dose independent | no | NA | NA |
| 578 | 93.14 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 598 | 93.17 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 606 | 93.18 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 609 | 93.18 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 616 | 93.19 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 737 | 93.32 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 865 | 93.46 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 869 | 93.46 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 1 | 14 |