BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0563700 Os10g0563700|AK072751
(151 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0563700 Similar to Nucleoside diphosphate kinase I (EC... 308 1e-84
Os07g0492000 Nucleoside diphosphate kinase I (EC 2.7.4.6) (... 254 2e-68
Os12g0548300 Similar to Nucleoside diphosphate kinase II, c... 214 2e-56
Os05g0595400 Similar to Nucleoside diphosphate kinase III (... 196 6e-51
AK119750 86 1e-17
Os02g0565100 Nucleoside-diphosphate kinase family protein 85 2e-17
>Os10g0563700 Similar to Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I)
(NDP kinase I) (PP18)
Length = 151
Score = 308 bits (788), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MALEQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFF 60
MALEQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFF
Sbjct: 1 MALEQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFF 60
Query: 61 GGLVEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSD 120
GGLVEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSD
Sbjct: 61 GGLVEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSD 120
Query: 121 SVENARKEIALWFPEGIAEWRSNQHPWIYEV 151
SVENARKEIALWFPEGIAEWRSNQHPWIYEV
Sbjct: 121 SVENARKEIALWFPEGIAEWRSNQHPWIYEV 151
>Os07g0492000 Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I) (NDP kinase I)
(NDPK I)
Length = 149
Score = 254 bits (649), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 115/148 (77%), Positives = 135/148 (91%)
Query: 3 LEQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGG 62
+EQ+FIMIKPDGVQRGLIG++I RFEKKGFYL+ MK +NVE+SFA++HYADLS KPFF G
Sbjct: 1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 60
Query: 63 LVEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSDSV 122
LVEYI+SGPVVAMVWEGK VV+TGR+++GAT P A PGTIR D+AV++GRNVIHGSDSV
Sbjct: 61 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 120
Query: 123 ENARKEIALWFPEGIAEWRSNQHPWIYE 150
+N +KEIALWFPEG+AEWRSN HPWIYE
Sbjct: 121 DNGKKEIALWFPEGLAEWRSNLHPWIYE 148
>Os12g0548300 Similar to Nucleoside diphosphate kinase II, chloroplast precursor
(EC 2.7.4.6) (NDK II) (NDP kinase II) (NDPK II)
Length = 220
Score = 214 bits (545), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/150 (65%), Positives = 117/150 (78%), Gaps = 1/150 (0%)
Query: 2 ALEQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFG 61
++EQ++IMIKPDGVQRGL+GE+I RFEKKGF LK +KL K A++HY DL KPFF
Sbjct: 71 SVEQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFP 130
Query: 62 GLVEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSDS 121
GL+EYI SGPVV M WEG VV++ RKL+GATNPL AEPGTIRGD AV GRNV+HGSDS
Sbjct: 131 GLIEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSDS 190
Query: 122 VENARKEIALWFPEG-IAEWRSNQHPWIYE 150
+N ++EIALWF EG + EW S PW+ E
Sbjct: 191 PDNGKREIALWFKEGELCEWESVLTPWLVE 220
>Os05g0595400 Similar to Nucleoside diphosphate kinase III (EC 2.7.4.6) (NDK III)
(NDP kinase III) (NDPK III)
Length = 239
Score = 196 bits (498), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 114/150 (76%), Gaps = 1/150 (0%)
Query: 3 LEQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGG 62
+E+TFI IKPDGVQRGLI E++ RFE+KGF L A+KL+ K FA+KHY DL +PFF G
Sbjct: 89 MERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPFFNG 148
Query: 63 LVEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSDSV 122
L +++ SGPV+AMVWEG+ V+ GRKL+GAT+P +EPGTIRGD AV +GRN+IHGSD
Sbjct: 149 LCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 208
Query: 123 ENARKEIALWF-PEGIAEWRSNQHPWIYEV 151
E A+ EI LWF P + + SN+ WIY V
Sbjct: 209 ETAKAEIGLWFEPRELVSYTSNEEKWIYGV 238
>AK119750
Length = 1213
Score = 85.5 bits (210), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 4/141 (2%)
Query: 3 LEQTFIMIKPDGVQRGLIGEVIGRF-EKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFG 61
L++T +IKPD V G ++ E+ GF + A + + K AE+ YA+ KPFF
Sbjct: 709 LQRTLAIIKPDAVAAGSTDAILSVVTEQYGFAVLATERTRLSKPRAEQFYAEHQGKPFFN 768
Query: 62 GLVEYIVSGPVVAMVWEGKQVVSTGRKLVGAT---NPLAAEPGTIRGDFAVDIGRNVIHG 118
LV+++ SGP+VA+ +++ RKL+G T L+ +P ++R F +N HG
Sbjct: 769 SLVDFMSSGPIVALCLAKPAAITSWRKLIGPTRRHEALSKKPHSLRARFGHSDTQNACHG 828
Query: 119 SDSVENARKEIALWFPEGIAE 139
S+ + A +EI +FP+ AE
Sbjct: 829 SEHDKAAEREIQFFFPQLPAE 849
>Os02g0565100 Nucleoside-diphosphate kinase family protein
Length = 181
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Query: 4 EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGL 63
E+T MIKPDG+ + + GF + ++ ++ A YA+ S + FF L
Sbjct: 36 ERTLAMIKPDGLSGNYTERIKEVILESGFDIVKEAVVQLDAERASLFYAEHSGRSFFDSL 95
Query: 64 VEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAE---PGTIRGDFAVDIGRNVIHGSD 120
V+Y+ SGPV+ M+ E +S R L+G T+ A+ P +IR VD +N +HGSD
Sbjct: 96 VKYMTSGPVLVMILERPDAISHWRVLIGPTDARKAKISNPNSIRAMCGVDSEKNCVHGSD 155
Query: 121 SVENARKEIALWF 133
S ++A +EI+ +F
Sbjct: 156 SPQSAAREISFFF 168
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,050,648
Number of extensions: 188245
Number of successful extensions: 440
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 6
Length of query: 151
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 59
Effective length of database: 12,232,113
Effective search space: 721694667
Effective search space used: 721694667
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)